PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g03690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | BES1 | ||||||||
Protein Properties | Length: 802aa MW: 88227 Da PI: 6.812 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 171.3 | 5.3e-53 | 57 | 204 | 1 | 138 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspe 91 gg+g++++++E+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++s+pl ++++ g ++ +s+e LOC_Os02g03690.1 57 GGGGEREREREKERTKLRERHRRAITSRMLSGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRASSQPLhpPTPQSPGIFHVNSVE 149 68999**********************************************************************998999************ PP DUF822 92 sslq.sslkssalaspvesysaspksssfpspssldsislasa.......asllp 138 +++ s+l+s+a+ +p++s+++++++++++spsslds+ +a++ ++ + LOC_Os02g03690.1 150 TPSFtSVLNSYAIGTPLDSQASMLQTDDSLSPSSLDSVVVADQsiknekyGNSDS 204 **99899*********************************998666555433344 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.7E-49 | 58 | 211 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene3D | G3DSA:3.20.20.80 | 9.1E-172 | 314 | 761 | IPR013781 | Glycoside hydrolase, catalytic domain |
SuperFamily | SSF51445 | 1.93E-173 | 314 | 794 | IPR017853 | Glycoside hydrolase superfamily |
Pfam | PF01373 | 1.3E-80 | 339 | 704 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.7E-49 | 352 | 366 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.7E-49 | 373 | 391 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.7E-49 | 486 | 508 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.7E-49 | 559 | 578 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.7E-49 | 593 | 609 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.7E-49 | 610 | 621 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.7E-49 | 628 | 651 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.7E-49 | 666 | 688 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 802 aa Download sequence Send to blast |
MSLKHPHSPV LDGDPPPHRR PRGLVSTPPP PAVAADTSPS PSPSPAAPPP RRRGGGGGGG 60 EREREREKER TKLRERHRRA ITSRMLSGLR QHGNFPLPAR ADMNDVLAAL ARAAGWTVHP 120 DGTTFRASSQ PLHPPTPQSP GIFHVNSVET PSFTSVLNSY AIGTPLDSQA SMLQTDDSLS 180 PSSLDSVVVA DQSIKNEKYG NSDSVSSLNC LENHQPVELE VVLPPPLAAL LVCGSTVVQL 240 MGGSMAGSAD GHPEEEQRER SGDGRVGACA GAAAGAEPVP AAVHSSSSHA VSAVIAAIGS 300 LTRASAALAG DYTRTPYIPV YASLPMGIIN SHCQLIDPEG IRAELMHLKS LNVDGVIVDC 360 WWGIVEAWIP HKYEWSGYRD LFGIIKEFKL KVQAVLSFHG SGETGSGGVS LPKWVMEIAQ 420 ENQDVFFTDR EGRRNMECLS WGIDKERVLR GRTGIEAYFD FMRSFHMEFR NLTEEGLISA 480 IEIGLGVSGE LKYPSCPERM GWRYPGIGEF QCYDRYMQKN LRQAALSRGH LFWARGPDNA 540 GYYNSRPHET GFFCDGGDYD SYYGRFFLNW YSGILIDHVD QVLSLATLAF DGVETVVKIP 600 SIYWWYRTAS HAAELTAGFY NPTNRDGYSP VFRMLKKHSV ILKFVCYGPE FTIQENNEAF 660 ADPEGLTWQV MNAAWDHGLS ISVESALPCL DGEMYSQILD TAKPRHDPDR HHVSFFAYRQ 720 LPSFLLQRDV CFSELGNFVK CMHDGSLIKI VVRVRTIIAH QSGSSALDVL MQRLTVLCIR 780 GVSTYPIKII RSRYLTTVIA L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdq_A | 1e-122 | 317 | 743 | 11 | 442 | Beta-amylase |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49427 | 0.0 | flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37989672 | 0.0 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g03690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g03690 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120049 | 0.0 | AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622759.1 | 0.0 | beta-amylase 8 | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A0E0N9A0 | 0.0 | A0A0E0N9A0_ORYRU; Beta-amylase | ||||
STRING | ORUFI02G02360.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2141 | 36 | 63 | Representative plant | OGRP9765 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.2 | 0.0 | beta-amylase 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g03690.1 |
Publications ? help Back to Top | |||
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