PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g03580.3
Common NameLOC4328173, Os02g0128200, OsJ_05225, OSNPB_020128200, P0482F12.32, P0576F08.5
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 348aa    MW: 37079.4 Da    PI: 5.5717
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g03580.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.41.2e-21244306163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elk+++rkq+NRe+ArrsR+RK+ae+eeL  ++++L aeN++L+ ele++kke+++l s++
  LOC_Os02g03580.3 244 ERELKKQKRKQSNRESARRSRLRKQAECEELSVRADNLRAENSSLRAELERIKKEYEALLSHN 306
                       89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.3E-29196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.2E-20123226No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-15242303No hitNo description
SMARTSM003381.8E-18244308IPR004827Basic-leucine zipper domain
PfamPF001701.9E-19244306IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.794246309IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-10247304No hitNo description
CDDcd147025.36E-25249299No hitNo description
PROSITE patternPS000360251266IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGTNDPGTPS KATKASEPEQ SPATTSGTTA PVYPEWPGFQ AYSAIPPHGF FPPPVAASPQ  60
AHPYMWGAQP MVPPYGTPPP YMMYPPGTVY AHPSTPGVHP FNHYPMLANG NVETAGTAPG  120
ASEINGKNEL GRTSGPSANG ITSHSESGSE SESEGSDANS QNDSHSKEND VKEDGSSQNG  180
ISHTALNQNM SMAPTQTGVV IGGVAPTTNL NIGMDYWGAA GSSPVPAMHG KASSGSVRGE  240
QWDERELKKQ KRKQSNRESA RRSRLRKQAE CEELSVRADN LRAENSSLRA ELERIKKEYE  300
ALLSHNASLK EKLEGNSDSI PYMNEQNDTN GTHQKQQDSD AQPNDAP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260266RRSRLRK
2260267RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.264910.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379885640.0
Expression AtlasQ6Z2L2-
Functional Description ? help Back to Top
Source Description
UniProtBinds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g03580.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g03580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119010.0AK111901.1 Oryza sativa Japonica Group cDNA clone:J023076M20, full insert sequence.
GenBankAK1120090.0AK112009.1 Oryza sativa Japonica Group cDNA clone:006-209-B12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626323.10.0transcription factor HBP-1a
RefseqXP_015626324.10.0transcription factor HBP-1a
SwissprotP239221e-148HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBLB8AH000.0B8AH00_ORYSI; Uncharacterized protein
TrEMBLQ6Z2L20.0Q6Z2L2_ORYSJ; Os02g0128200 protein
STRINGOS02T0128200-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.11e-58basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]
  2. Tabata T, et al.
    A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
    Science, 1989. 245(4921): p. 965-7
    [PMID:2772648]
  3. Mikami K, et al.
    Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
    Mol. Gen. Genet., 1995. 248(5): p. 573-82
    [PMID:7476857]
  4. Nakayama T,Okanami M,Meshi T,Iwabuchi M
    Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
    Mol. Gen. Genet., 1997. 253(5): p. 553-61
    [PMID:9065688]
  5. Okanami M,Meshi T,Tamai H,Iwabuchi M
    HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
    Genes Cells, 1996. 1(1): p. 87-99
    [PMID:9078369]