PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g02820.1 | ||||||||
Common Name | BHLH5, LOC4328113, OJ1020_C02.6, Os02g0120500, OsJ_05158, OSJNBb0088N06.15, TDR | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 553aa MW: 58274.4 Da PI: 4.4495 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.6e-12 | 288 | 331 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 e+Er+RR+++N + +Lr+l+P+ +K++ a+iL A++YI Lq LOC_Os02g02820.1 288 EAERKRRKKLNGHLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 331 89*********************7.....7***************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.18E-13 | 280 | 342 | No hit | No description |
PROSITE profile | PS50888 | 15.37 | 281 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.51E-18 | 282 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-15 | 287 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 288 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 288 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MGRGDHLLMK NSNAAAAAAA VNGGGTSLDA ALRPLVGSDG WDYCIYWRLS PDQRFLEMTG 60 FCCSSELEAQ VSALLDLPSS IPLDSSSIGM HAQALLSNQP IWQSSSEEEE ADGGGGAKTR 120 LLVPVAGGLV ELFASRYMAE EQQMAELVMA QCGGGGAGDD GGGQAWPPPE TPSFQWDGGA 180 DAQRLMYGGS SLNLFDAAAA DDDPFLGGGG GDAVGDEAAA AGAWPYAGMA VSEPSVAVAQ 240 EQMQHAAGGG VAESGSEGRK LHGGDPEDDG DGEGRSGGAK RQQCKNLEAE RKRRKKLNGH 300 LYKLRSLVPN ITKMDRASIL GDAIDYIVGL QKQVKELQDE LEDNHVHHKP PDVLIDHPPP 360 ASLVGLDNDD ASPPNSHQQQ PPLAVSGSSS RRSNKDPAMT DDKVGGGGGG GHRMEPQLEV 420 RQVQGNELFV QVLWEHKPGG FVRLMDAMNA LGLEVINVNV TTYKTLVLNV FRVMVRDSEV 480 AVQADRVRDS LLEVTRETYP GVWPSPQEED DAKFDGGDGG QAAAAAAAAG GEHYHDEVGG 540 GYHQHLHYLA FD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 289 | 296 | ERKRRKKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.50000 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37989203 | 0.0 | ||||
Expression Atlas | Q6YUS3 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g02820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: Male sterility due to failure of tapetum programmed cell death (PCD) and degeneration, and collapse of microspores in developing anthers (PubMed:17138695). Altered pollen wall formation (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g02820 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119580 | 0.0 | AK119580.1 Oryza sativa Japonica Group cDNA clone:002-117-B12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625730.1 | 0.0 | transcription factor TDR | ||||
Refseq | XP_025878930.1 | 0.0 | transcription factor TDR | ||||
Refseq | XP_025878931.1 | 0.0 | transcription factor TDR | ||||
Swissprot | Q6YUS3 | 0.0 | TDR_ORYSJ; Transcription factor TDR | ||||
TrEMBL | A0A0E0N8Z7 | 0.0 | A0A0E0N8Z7_ORYRU; Uncharacterized protein | ||||
STRING | OS02T0120500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5530 | 34 | 49 | Representative plant | OGRP3704 | 13 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 4e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g02820.1 |
Entrez Gene | 4328113 |