PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g01950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 518aa MW: 60781.8 Da PI: 6.17 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.7 | 1.6e-22 | 106 | 200 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +++n+YA+++GFs+++++s ++ krnge++++tf+ +k+ k++ +kk+ ++er+t+++ t+Ck+ l+++++ ++ w++++++l+HnHe LOC_Os02g01950.1 106 NYFNFYAYMAGFSIVNAHSARTlskKRNGEVIRETFKYNKYVKSDCNKKEetITSERKTNEVIGTECKCVLVISER-NSIWVISRIDLDHNHE 197 69******************99999*******************9999997778999******************9.**************** PP FAR1 89 lap 91 l+p LOC_Os02g01950.1 198 LSP 200 *86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.0E-22 | 106 | 200 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.4E-33 | 320 | 413 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MQKNMSEVIP EINFEAQVDS VQPWSLDLFN LQESIEQQSS IQSSDKGEST TEVDPDLNEE 60 FLTEEDIEQF LDEEQQEASK GNNASIDRKY IPELNQKFKS IDEAQNYFNF YAYMAGFSIV 120 NAHSARTLSK KRNGEVIRET FKYNKYVKSD CNKKEETITS ERKTNEVIGT ECKCVLVISE 180 RNSIWVISRI DLDHNHELSP PDEARFLRSH KYMSTEEKIL IRTLKECHIP TRNMIVILSV 240 LRGGLTSLPY TKKDISNVRT SINRETSSND LMQCLNFLKK KQEEDPNFFY EFDLDENRKV 300 KNFFWTDGRS REWYYKFGDC ISFDTTFLTN RYNLPFAPFV RVSGHGNTIL FGCAFIHDET 360 TETFEWLFRA FLKAMNGKQP KTIITDQDGA IRAAIKNIFT EAKHRNCFFH IVSKALKRSG 420 SLFKKRQGLY DIYNDIIHNS LTEEEFEFLW EDMIQVFNLQ DINFLRNMWE IRKRFIPVYF 480 KTNFYPFIQS TALSEGTHLV LLAITQIKNC NYRDKKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g01950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g01950 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004769 | 0.0 | AP004769.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0017C12. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881725.1 | 1e-166 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | J3MVQ9 | 0.0 | J3MVQ9_ORYBR; Uncharacterized protein | ||||
STRING | OB09G10870.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-73 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g01950.1 |