PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g01860.1 | ||||||||
Common Name | OsJ_35113 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 610aa MW: 70350.7 Da PI: 7.3143 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.8 | 3.1e-22 | 36 | 125 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +f+ +Y+ ++GF+vrk++++ks+ ++ +t+++fvCs++g+r+eekk ++r+r++trtgC+ ++ +++ + + +++v++l eH+H l+ LOC_Os02g01860.1 36 DFWVKYGGRIGFDVRKNYTNKSDLDQLVTSSRFVCSNQGSRAEEKKY-AVAKRNRTHTRTGCQVRMGITLLReTMTYKVHDLAVEHSHLLQ 125 69*******************************************99.99999****************98889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-15 | 36 | 125 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.2E-27 | 247 | 341 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.545 | 388 | 426 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.8E-5 | 401 | 428 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 6.6E-5 | 402 | 424 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MTVEKAMEQN LERSTKPPCW MPQIGMTFNS YEEAWDFWVK YGGRIGFDVR KNYTNKSDLD 60 QLVTSSRFVC SNQGSRAEEK KYAVAKRNRT HTRTGCQVRM GITLLRETMT YKVHDLAVEH 120 SHLLQTPQTS RLMPSQRNIS KHQAVEIEVA YDSGITPKAA HEFLGRHVGG SANLGYTQRD 180 HKNYLRSRRQ RDLLYGEAGS LLKYFQDKIV ENPSFHYAVQ LDCEEQIANI FWADARMIAD 240 YAHFGDVITF DTTFGTNKES RPFGMFVGFN HFRETVVFGA ALMYDETFES FKWMFNTFLS 300 AHNQKQPQTI FTDQDIAMGK AVSEVFTGAW HGLCTWHISQ NAVKHLSPQQ TEGSSILADF 360 SACMYEYEEK EEFEEVFDAM RQKFILEDEH KLTANPFDQT VSCSCRLFER IGLLCRHALK 420 ALDLVNIKLL PEKYVLKRWT REAKCGAIQD MHGRQIVEDP KLSTTLRYRY LYQQFLPLAS 480 RAADFEECYL LVEEALHAVS KKVEDKIKQT YSDGIAKSND QSTSQLAQNL AHVSGLKKKE 540 SRKRVTKRKT NWIDKLQKTK KRKPEEKAEE ENMQTDVEEH QECEAISSYA QLLLGSIDVE 600 DVILSQKFI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 546 | 560 | KRKTNWIDKLQKTKK |
2 | 546 | 562 | KRKTNWIDKLQKTKKRK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | B9GBQ0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g01860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g01860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004769 | 0.0 | AP004769.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0017C12. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619119.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | B9GBQ0 | 0.0 | B9GBQ0_ORYSJ; Uncharacterized protein | ||||
STRING | Sb04g027771.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-64 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g01860.1 |