PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g01365.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 484aa    MW: 53616.7 Da    PI: 7.8989
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g01365.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-275099251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rie+ + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+ly ++s
  LOC_Os02g01365.1 50 RIEDATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGRLYQFAS 99
                      8***********************************************86 PP
2K-box72.71.1e-24123214899
             K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       + ee+  ++++ e++ L k+ie ++  + +llGe+L+s+s++eLq+Le qLeksl +iR+kK+++l++qi el++ke +l +en+ Lr + +
  LOC_Os02g01365.1 123 EGEESCVQKWRSEATTLGKKIEAIEGYKSKLLGEGLGSCSVQELQELEVQLEKSLCSIRQKKQKMLMDQILELREKEMNLLKENMVLRDQCK 214
                       3678889*********************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002654.73E-3532118No hitNo description
PROSITE profilePS5006629.71641101IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-3541100IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-274363IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004397IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-2943119IPR002100Transcription factor, MADS-box
PfamPF003199.9E-265097IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-276378IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-277899IPR002100Transcription factor, MADS-box
PfamPF014861.7E-24126213IPR002487Transcription factor, K-box
PROSITE profilePS5129713.808129219IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MAAAAAGMGG GGGVQHQETT TTVVQVAAEA SRKKVEVRSA GRRGRREMRR IEDATSRQVT  60
FSKRRSGLLK KAFELSVLCD AEVALIVFSP RGRLYQFASA SSDLQRTIDR YLNHTKNSSA  120
HEEGEESCVQ KWRSEATTLG KKIEAIEGYK SKLLGEGLGS CSVQELQELE VQLEKSLCSI  180
RQKKQKMLMD QILELREKEM NLLKENMVLR DQCKALSSPW STSVGELKNK QADDDVHRHE  240
DYSGGGVRDD DDRRMMEDVE TDLAAANQAG KVLKKGKKKQ AKDELDRQKQ AEKKRRRLEK  300
ALANSAAIIS ELEKKKQKKR EEQQRLDEEG AAIAEAVALH VLIGEDSDEP CHLMLNKHRR  360
CNHWDHSAGF DFAVDAQGAD IYPPDGLIQC ADHVYAPKGR CIDWGIGQPL PSWGEVKDLQ  420
LQAPCYQGMF HQSVACPGFI AAQAVSSLQI GGDSSDITSP SQGATVVNRM LGATNRLNLY  480
REI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n6j_A3e-1643122276Myocyte-specific enhancer factor 2B
1n6j_B3e-1643122276Myocyte-specific enhancer factor 2B
1tqe_P3e-1643122377Myocyte-specific enhancer factor 2B
1tqe_Q3e-1643122377Myocyte-specific enhancer factor 2B
1tqe_R3e-1643122377Myocyte-specific enhancer factor 2B
1tqe_S3e-1643122377Myocyte-specific enhancer factor 2B
6c9l_A3e-1643122377Myocyte-specific enhancer factor 2B
6c9l_B3e-1643122377Myocyte-specific enhancer factor 2B
6c9l_C3e-1643122377Myocyte-specific enhancer factor 2B
6c9l_D3e-1643122377Myocyte-specific enhancer factor 2B
6c9l_E3e-1643122377Myocyte-specific enhancer factor 2B
6c9l_F3e-1643122377Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276296KKKQAKDELDRQKQAEKKRRR
2293297KRRRL
3294317RRRLEKALANSAAIISELEKKKQK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.101770.0callus| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166411130.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g01365.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g01365
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218240.0AK121824.1 Oryza sativa Japonica Group cDNA clone:J033099F22, full insert sequence.
GenBankAP0040490.0AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06.
GenBankAP0067200.0AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625202.10.0MADS-box protein SOC1 isoform X1
TrEMBLA0A0E0N8J50.0A0A0E0N8J5_ORYRU; Uncharacterized protein
STRINGORUFI02G00390.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38051616
Representative plantOGRP387233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-48AGAMOUS-like 20