PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g01090.1 | ||||||||
Common Name | LOC107275345, Os02g0100900, OsJ_04985, OSNPB_020100900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 128aa MW: 13999.7 Da PI: 10.3063 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.3e-05 | 29 | 51 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H LOC_Os02g01090.1 29 YPCGFCRREFRSAQALGGHMNVH 51 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.3E-6 | 26 | 55 | No hit | No description |
PROSITE profile | PS50157 | 10.741 | 29 | 56 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 31 | 51 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MNNSSGSSRR EEAWRQQQLI LQAKKARSYP CGFCRREFRS AQALGGHMNV HRRDRARLRL 60 THQPDAALIA SPSTKSTPPL LPNLNYPPPP PHDGASSSSP PHLPRPPADA DADADAGLDL 120 ELRLAFF* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A3A246 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed early in the third whorl, and later becomes localized at the boundary between the stamen and carpel whorls. Also detected in developing ovule primordia. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator considered as cadastral protein that acts indirectly to prevent the B class homeotic proteins APETALA3 and perhaps PISTILLATA from acting in the gynoecial whorl. Principal function is to balance cell proliferation in the third and fourth whorls of developing flowers thereby maintaining the boundary between stamens and carpels. May fulfill this role by repressing genes implicated in cell division. Plays equally a role in the determinacy of the floral meristem. Is also required for normal ovule development. {ECO:0000269|PubMed:11006335, ECO:0000269|PubMed:11943180, ECO:0000269|PubMed:12324589, ECO:0000269|PubMed:1352237, ECO:0000269|PubMed:7477325}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g01090.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by KRYPTONITE/SUVH4, member of the histone H3-K9 methyltransferase family that contributes with other factors to the CpNpG methylation of the SUP gene resulting in its silencing. The alternative epigenetic states of the SUPERMAN locus have been called Clark Kent alleles. Positively regulated at an early stage of development by LEAFY and by B class homeotic proteins APETALA3 and PISTILLATA. Later expression is maintained by both the B class homeotic proteins and the C class homeotic protein AGAMOUS. These two steps of regulation require the intervention of additional factors. {ECO:0000269|PubMed:11898023}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g01090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005873 | 0.0 | AP005873.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1370C05. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624301.1 | 1e-87 | transcriptional regulator SUPERMAN | ||||
Swissprot | Q38895 | 1e-15 | SUP_ARATH; Transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A0E0FZR7 | 2e-86 | A0A0E0FZR7_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0N8F0 | 2e-86 | A0A0E0N8F0_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2WZQ9 | 2e-86 | A2WZQ9_ORYSI; Uncharacterized protein | ||||
TrEMBL | A3A246 | 2e-86 | A3A246_ORYSJ; Os02g0100900 protein | ||||
STRING | ORUFI02G00090.1 | 4e-87 | (Oryza rufipogon) | ||||
STRING | ONIVA02G00110.1 | 4e-87 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 6e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g01090.1 |
Entrez Gene | 107275345 |
Publications ? help Back to Top | |||
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