PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g74590.1 | ||||||||
Common Name | LOC4327813, Os01g0977300, OsJ_04971, OSNPB_010977300, P0020E09.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 27339.3 Da PI: 10.5197 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.2e-16 | 10 | 55 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W +eEd ll ++v+q+G+++W+ I+ ++ gR++k+c++rw + LOC_Os01g74590.1 10 KGSWRAEEDALLTRLVAQHGPHRWSIISGAIP-GRSGKSCRLRWCNQ 55 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 60.1 | 4.9e-19 | 64 | 106 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ed ll+ a++++G++ W+tIar ++ gRt++++k++w++ LOC_Os01g74590.1 64 PFTPQEDALLAAAHARHGNK-WATIARLLP-GRTDNSVKNHWNSN 106 89******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.919 | 5 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-29 | 8 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 9 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-15 | 10 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 11 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.52E-13 | 12 | 54 | No hit | No description |
SMART | SM00717 | 1.2E-15 | 61 | 109 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.914 | 61 | 111 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-23 | 62 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-16 | 64 | 106 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGMCSKTRKK GSWRAEEDAL LTRLVAQHGP HRWSIISGAI PGRSGKSCRL RWCNQLSPAV 60 QHRPFTPQED ALLAAAHARH GNKWATIARL LPGRTDNSVK NHWNSNLRRC LRRQAKFKSK 120 DPDLLPDPIN IPPDCIVVLN DDDEPADRPV TPPAIIQAQA QETLPSLTLS LSLSLPGAAA 180 AAAEVEVAPP PPRALAAASE IQDGSSRSSS ASRVMLQVMR QMVREEVQRH TAQLAYSLMA 240 LASCSRRPPN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-36 | 10 | 109 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-35 | 10 | 109 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-35 | 10 | 109 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 8e-36 | 10 | 109 | 4 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 8e-36 | 10 | 109 | 4 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.16203 | 0.0 | panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32995840 | 0.0 | ||||
Expression Atlas | Q84SF0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g74590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g74590 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110631 | 0.0 | AK110631.1 Oryza sativa Japonica Group cDNA clone:002-169-B11, full insert sequence. | |||
GenBank | AP003228 | 0.0 | AP003228.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0020E09. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878300.1 | 0.0 | transcription factor MYB44 | ||||
TrEMBL | A0A0D3EZD1 | 0.0 | A0A0D3EZD1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YKV1 | 0.0 | A0A0D9YKV1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0N8C4 | 0.0 | A0A0E0N8C4_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1NVS3 | 0.0 | I1NVS3_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q84SF0 | 0.0 | Q84SF0_ORYSJ; Os01g0977300 protein | ||||
STRING | OGLUM01G50230.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI01G49370.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0977300-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA01G0396300.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART01G45880.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13544 | 27 | 31 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 1e-48 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g74590.1 |
Entrez Gene | 4327813 |