PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g74540.1 | ||||||||
Common Name | LOC4327810, Os01g0976800, OsJ_04967, OSNPB_010976800, P0020E09.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GATA | ||||||||
Protein Properties | Length: 143aa MW: 15564.8 Da PI: 9.8806 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.1 | 1.3e-19 | 24 | 58 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++ LOC_Os01g74540.1 24 CADCHTTKTPLWRGGPGGPKSLCNACGIRYRKRRR 58 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.9E-16 | 18 | 75 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.703 | 18 | 54 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.28E-12 | 19 | 57 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-15 | 22 | 58 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.27E-14 | 23 | 58 | No hit | No description |
Pfam | PF00320 | 2.1E-17 | 24 | 58 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 24 | 49 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MDMDSSSSPV DKVDPDECNG SKACADCHTT KTPLWRGGPG GPKSLCNACG IRYRKRRRAA 60 LGLDSSATAT ATDGAEQQKK TKAKKEKAQE EEVTMELHTV GFRSKDAAVF KQRRRMRRRK 120 CLGEEERAAI LLMALSSGVI YA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 57 | RKRRR |
2 | 111 | 117 | QRRRMRR |
3 | 112 | 119 | RRRMRRRK |
4 | 113 | 118 | RRMRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.42941 | 0.0 | callus| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297598422 | 0.0 | ||||
Expression Atlas | Q5JNB8 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g74540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g74540 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241643 | 0.0 | AK241643.1 Oryza sativa Japonica Group cDNA, clone: J065189M03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641177.1 | 1e-101 | GATA transcription factor 16 | ||||
TrEMBL | Q5JNB8 | 1e-100 | Q5JNB8_ORYSJ; Os01g0976800 protein | ||||
STRING | OS01T0976800-01 | 1e-101 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2418 | 38 | 92 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 3e-24 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g74540.1 |
Entrez Gene | 4327810 |