PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g74410.2 | ||||||||
Common Name | Os01g0975300, OSNPB_010975300, P0459B04.21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 211aa MW: 24075.6 Da PI: 6.7855 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.2e-18 | 45 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++eE+ v+++++lG++ W++Ia+ ++ gRt++++k++w+++l LOC_Os01g74410.2 45 RGRMSPEEERMVVQLHAKLGNR-WSRIAKSIP-GRTDNEIKNYWRTHL 90 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.844 | 17 | 39 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.18E-21 | 22 | 98 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-9 | 25 | 52 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.333 | 40 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-17 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 45 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.58E-13 | 47 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 53 | 91 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MRAINAGCWI VRRVYGWCVA DAGLQRSGKS CRLRWVNYLH PGLKRGRMSP EEERMVVQLH 60 AKLGNRWSRI AKSIPGRTDN EIKNYWRTHL RKLKLKQQKQ QQSDDHHNDN DDDDDRNSSS 120 SSSSSNSNSN LQQQPQPEDE SSASGSLQAQ HHEDQHQLFL HPLWNDDIIV DVDCWSSSTN 180 VVAPPPMPAS PLWDIDDAFF CSDYSLPLWG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-18 | 15 | 92 | 22 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.408 | 0.0 | callus| leaf| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 52550774 | 0.0 | ||||
Expression Atlas | Q5JL15 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB59-1 and isoform MYB59-2 are present in roots, leaves, and seedlings, while the expression of isoform MYB59-3 and isoform MYB59-4 is confined to seedlings. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g74410.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g74410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061823 | 0.0 | AK061823.1 Oryza sativa Japonica Group cDNA clone:001-040-C01, full insert sequence. | |||
GenBank | AK066180 | 0.0 | AK066180.1 Oryza sativa Japonica Group cDNA clone:J013058H19, full insert sequence. | |||
GenBank | AP003627 | 0.0 | AP003627.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0459B04. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY569615 | 0.0 | AY569615.1 Oryza sativa (japonica cultivar-group) MYB transcription factor (Myb) precursor RNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621159.1 | 1e-103 | transcription factor MYB59 | ||||
Swissprot | Q4JL84 | 8e-38 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | Q5JL15 | 1e-154 | Q5JL15_ORYSJ; Os01g0975300 protein | ||||
STRING | OS01T0975300-02 | 1e-154 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 3e-37 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g74410.2 |
Publications ? help Back to Top | |||
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