PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g73770.1 | ||||||||
Common Name | CBF2, DREB1F, ERF27, LOC4323832, OJ1656_A11.17, Os01g0968800, OsJ_004800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 23817.6 Da PI: 6.1627 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.8 | 1.7e-15 | 45 | 97 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + rWv+e+r+p + +r++lg++ t+e+Aa+a++ a+ +l+ge LOC_Os01g73770.1 45 PVYRGVRARAGGSRWVCEVREP-----QaqARIWLGTYPTPEMAARAHDVAAIALRGE 97 68********9999****9999.....446**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.5E-12 | 45 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-25 | 46 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-24 | 46 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-16 | 46 | 107 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.18 | 46 | 105 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.43E-21 | 47 | 107 | No hit | No description |
PRINTS | PR00367 | 5.9E-6 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-6 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009038 | anatomy | palea | ||||
PO:0001048 | developmental stage | palea development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDTEDTSSAS SSSVSPPSSP GGGHHHRLPP KRRAGRKKFR ETRHPVYRGV RARAGGSRWV 60 CEVREPQAQA RIWLGTYPTP EMAARAHDVA AIALRGERGA ELNFPDSPST LPRARTASPE 120 DIRLAAAQAA ELYRRPPPPL ALPEDPQEGT SGGGATATSG RPAAVFVDED AIFDMPGLID 180 DMARGMMLTP PAIGRSLDDW AAIDDDDDHY HMDYKLWMD* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 33637699 | 0.0 | ||||
Expression Atlas | Q8S9Z5 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g73770.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g73770 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003448 | 0.0 | AP003448.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1656_A11. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY345234 | 0.0 | AY345234.1 Oryza sativa transcription factor RCBF2 mRNA, complete cds. | |||
GenBank | AY785897 | 0.0 | AY785897.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare OsDREB1F (DREB1F) gene, complete cds. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
GenBank | LK931412 | 0.0 | LK931412.1 Oryza nivara OsDREB1F gene for transcription factor, allele NKSWR70. | |||
GenBank | LK931435 | 0.0 | LK931435.1 Oryza nivara OsDREB1F gene for transcription factor, allele NKSWR65. | |||
GenBank | LK931441 | 0.0 | LK931441.1 Oryza nivara OsDREB1F gene for transcription factor, allele NKSWR78. | |||
GenBank | LK931446 | 0.0 | LK931446.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv330630. | |||
GenBank | LK931453 | 0.0 | LK931453.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv330631. | |||
GenBank | LK931461 | 0.0 | LK931461.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336700. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645845.1 | 1e-157 | dehydration-responsive element-binding protein 1F | ||||
Swissprot | A2WZI4 | 1e-158 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 1e-158 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A0E0FZG1 | 1e-155 | A0A0E0FZG1_ORYNI; Transcription factor | ||||
TrEMBL | A0A0E0N844 | 1e-155 | A0A0E0N844_ORYRU; Transcription factor | ||||
TrEMBL | A0A0H5BVM5 | 1e-155 | A0A0H5BVM5_ORYSI; Transcription factor | ||||
TrEMBL | I1NVL5 | 1e-155 | I1NVL5_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI01G48730.1 | 1e-156 | (Oryza rufipogon) | ||||
STRING | OS01T0968800-00 | 1e-156 | (Oryza sativa) | ||||
STRING | ONIVA01G51530.1 | 1e-156 | (Oryza nivara) | ||||
STRING | ORGLA01G0390500.1 | 1e-156 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 3e-45 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g73770.1 |
Entrez Gene | 4323832 |
Publications ? help Back to Top | |||
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