PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g71970.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 443aa    MW: 48023.8 Da    PI: 6.5718
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g71970.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.75.5e-125504371374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilk 92 
                       l++lLl+cA a ++g l +a+a+L+++  la+pdgd+mqR+aa f+eALa+r +r +++l++al  p++++  + +e++aa++ f +++P+l+
  LOC_Os01g71970.1  50 LIHLLLNCAAAAAAGRLDAANAALEHIASLAAPDGDAMQRVAAAFAEALARRALRAWPGLCRALlLPRASP--TPAEVAAARRHFLDLCPFLR 140
                       689************************************************************94444444..6899999************* PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                       ++  +aNq Ilea+e+e+ vH+iD++    +QW+ Ll+ La+Rpegpp+lR+T v++    +ke l +t+  L+k Ae+l+vpf+fn+ v++r
  LOC_Os01g71970.1 141 LAGAAANQSILEAMESEKIVHVIDLGGADATQWLELLHLLAARPEGPPHLRLTSVHE----HKELLTQTAMALTKEAERLDVPFQFNP-VVSR 228
                       *********************************************************....9**************************.7*** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrll....................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                       l++l++e+Lrvk+gEala++++lqlh ll                    +   +++s+ d++L ++++lsPkv+vv+eqea+hn++ + erf+
  LOC_Os01g71970.1 229 LDALDVESLRVKTGEALAICSSLQLHCLLasdddaaavaggdkerrspeSGLSPSTSRADAFLGALWGLSPKVMVVAEQEASHNAAGLTERFV 321
                       ********************************************9997522233344789********************************* PP

              GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                       eal+yy+alfd+le++++r s er+ vEr llg+ei+n+vac g errerhe+le+W +rle aGF+ vpls++a  qa+++ +  + dg++v
  LOC_Os01g71970.1 322 EALNYYAALFDCLEVGAARGSVERARVERWLLGEEIKNIVACDGGERRERHERLERWARRLEGAGFGRVPLSYYALLQARRVAQGLGCDGFKV 414
                       ********************************************************************************************* PP

              GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                        ee+g ++l+W+dr+L+svSaWr
  LOC_Os01g71970.1 415 REEKGNFFLCWQDRALFSVSAWR 437
                       **********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.50424417IPR005202Transcription factor GRAS
PfamPF035141.9E-12250437IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MVQDEGSSSS VTSSPLHNFS NMPLHPAAAA SPTPPWMVRE LRSDERGLCL IHLLLNCAAA  60
AAAGRLDAAN AALEHIASLA APDGDAMQRV AAAFAEALAR RALRAWPGLC RALLLPRASP  120
TPAEVAAARR HFLDLCPFLR LAGAAANQSI LEAMESEKIV HVIDLGGADA TQWLELLHLL  180
AARPEGPPHL RLTSVHEHKE LLTQTAMALT KEAERLDVPF QFNPVVSRLD ALDVESLRVK  240
TGEALAICSS LQLHCLLASD DDAAAVAGGD KERRSPESGL SPSTSRADAF LGALWGLSPK  300
VMVVAEQEAS HNAAGLTERF VEALNYYAAL FDCLEVGAAR GSVERARVER WLLGEEIKNI  360
VACDGGERRE RHERLERWAR RLEGAGFGRV PLSYYALLQA RRVAQGLGCD GFKVREEKGN  420
FFLCWQDRAL FSVSAWRGRR FD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-65344392380Protein SCARECROW
5b3h_D4e-65344392380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.589820.0callus| flower| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g71970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g71970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875400.0AK287540.1 Oryza sativa Japonica Group cDNA, clone: J065011K01, full insert sequence.
GenBankAP0032590.0AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610769.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR81e-171SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0D9YK000.0A0A0D9YK00_9ORYZ; Uncharacterized protein
STRINGOGLUM01G48120.40.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-128scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]