PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os01g71850.1

Common Name

P0466H10.9

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 1061aa MW: 122595 Da PI: 6.749

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os01g71850.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.3	1.1e-27	342	438	1	91
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +f+n+YA++vGFsv++++++ks kr g+itk+t++C+++gk+++ +kk t+++r+t++ +rt+Ck++l+v++e ++w++ +++l+Hn LOC_Os01g71850.1 342 SFFNFYAYQVGFSVVITHHYKStskKRFGQITKYTYQCYRYGKNDDGQKKkkkkTQQQRNTQVIDRTDCKCMLTVRLE-GDVWRILSMNLNHN 433 59*****************99989999**********99877777777899999**************.9********* PP FAR1 87 Helap 91 H+l+p LOC_Os01g71850.1 434 HTLTP 438 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-27	342	438	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.9E-37	559	651	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.767	845	881	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.4E-4	856	883	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1061 aa Download sequence Send to blast
MTIYLSCREA IQEGETIRQQ SEESKNDAMH IEGSKRNINM APGRLAYAGS PNIYNLQEGE 60 GSSSKMPHLG CRKIQHVGKN FNSPELSNTI GTIASEVVNY GGQMLYDQFT LLNSDPRQEG 120 QLSYTNLMHQ IIHSPTVTIQ QQTGGQESFT SLLRTPAFDN SMILTTSRFS PELEEQQDMT 180 YEQHISTTHW SYEEFDQIYN SKYITPFAEN TTARIEELYQ SKNSHFTTKD NEVDMATEND 240 DYVELNSDDE NEQEGTSNML QQDSQINTIT AIEQVEQHVG QEETTSETKA TSAEDNDTIN 300 EEDINNYLAN EEDSQDNTPV VIDKKHIPCI GKKFRTHEEA RSFFNFYAYQ VGFSVVITHH 360 YKSTSKKRFG QITKYTYQCY RYGKNDDGQK KKKKKTQQQR NTQVIDRTDC KCMLTVRLEG 420 DVWRILSMNL NHNHTLTPNR EAKFLRSHKH MTDEEKKLIR TLKQCNIPTR NMISILSFLR 480 GGIAALPYTR KDVSNVGTAI NSETRNTDMN QVMEYLRQKE AKDPGYYYKL TLDENNKVKS 540 MFWTDGRSTQ LYEQYGEFVS FDTTYKTNRY NMPFAPIVGV TGHGNICIFA CAFLGDETTE 600 TFKWVFETFL TAMGGKHPET IITDQDLAMR AAIRQVFPNS KHRNCLFHIL KKCRERSGNT 660 FSDKRRKDLY AEFNDIVHNS LTRAEFESLW LQMIAQYNLE NIKYLEIMWR TRKNFIPVYS 720 KTDFCPFIHS TALSEGTNAR FKRGVGPTHS VMTFLLEYET INDIIFDTEY GKDYESRNKK 780 PKSFWSNYMI EEQAADLYNH GIFDKFQDEL KGTLNLEVAA IQQGKAYEVY AAPNLKQQEF 840 RPRRYVVMTD LPQENFMCIC AKFSKDGILC SHVLKVMLYL KMSKIPDKYI IERWRKKERK 900 LTVSMQLATN DENSSVLRFN VLSRRICNMA SKASKSKETY EYLLGEIDNL DSNLDLIIED 960 AAQNQATIDE SNTVENTSED QAEKETTNEQ EDIQDPDIAN TKGKKSTRTK GMVEKIKEQP 1020 KKHCTRCGRT SHTIENCPLM RIARSTKKIQ KTTTTSKRNE *

Sequence ? help Back to Top

Protein Sequence Length: 1061 aa Download sequence Send to blast

MTIYLSCREA IQEGETIRQQ SEESKNDAMH IEGSKRNINM APGRLAYAGS PNIYNLQEGE  60
GSSSKMPHLG CRKIQHVGKN FNSPELSNTI GTIASEVVNY GGQMLYDQFT LLNSDPRQEG  120
QLSYTNLMHQ IIHSPTVTIQ QQTGGQESFT SLLRTPAFDN SMILTTSRFS PELEEQQDMT  180
YEQHISTTHW SYEEFDQIYN SKYITPFAEN TTARIEELYQ SKNSHFTTKD NEVDMATEND  240
DYVELNSDDE NEQEGTSNML QQDSQINTIT AIEQVEQHVG QEETTSETKA TSAEDNDTIN  300
EEDINNYLAN EEDSQDNTPV VIDKKHIPCI GKKFRTHEEA RSFFNFYAYQ VGFSVVITHH  360
YKSTSKKRFG QITKYTYQCY RYGKNDDGQK KKKKKTQQQR NTQVIDRTDC KCMLTVRLEG  420
DVWRILSMNL NHNHTLTPNR EAKFLRSHKH MTDEEKKLIR TLKQCNIPTR NMISILSFLR  480
GGIAALPYTR KDVSNVGTAI NSETRNTDMN QVMEYLRQKE AKDPGYYYKL TLDENNKVKS  540
MFWTDGRSTQ LYEQYGEFVS FDTTYKTNRY NMPFAPIVGV TGHGNICIFA CAFLGDETTE  600
TFKWVFETFL TAMGGKHPET IITDQDLAMR AAIRQVFPNS KHRNCLFHIL KKCRERSGNT  660
FSDKRRKDLY AEFNDIVHNS LTRAEFESLW LQMIAQYNLE NIKYLEIMWR TRKNFIPVYS  720
KTDFCPFIHS TALSEGTNAR FKRGVGPTHS VMTFLLEYET INDIIFDTEY GKDYESRNKK  780
PKSFWSNYMI EEQAADLYNH GIFDKFQDEL KGTLNLEVAA IQQGKAYEVY AAPNLKQQEF  840
RPRRYVVMTD LPQENFMCIC AKFSKDGILC SHVLKVMLYL KMSKIPDKYI IERWRKKERK  900
LTVSMQLATN DENSSVLRFN VLSRRICNMA SKASKSKETY EYLLGEIDNL DSNLDLIIED  960
AAQNQATIDE SNTVENTSED QAEKETTNEQ EDIQDPDIAN TKGKKSTRTK GMVEKIKEQP  1020
KKHCTRCGRT SHTIENCPLM RIARSTKKIQ KTTTTSKRNE *

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q5JMV5

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os01g71850.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os01g71850

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003259	0.0	AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881725.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	Q5JMV5	0.0	Q5JMV5_ORYSJ; Far-red impaired response-like
STRING	OB09G10870.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-90	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	LOC_Os01g71850.1