PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g71790.1 | ||||||||
Common Name | LOC4325828, Os01g0946200, OSNPB_010946200, P0614D08.37, P0660F12.31 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 205aa MW: 22478.5 Da PI: 9.3206 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.6 | 5.1e-19 | 17 | 148 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyWk..atgkd 89 G+ F+Pt++el+ ++L+++++g +++ ++ e+d + + Pw+L ++ +++++e +fFs r++++++ +r+ g W +t + LOC_Os01g71790.1 17 GVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLAR-HGRREEGFFFSARARRKPSVRRTVAGcggggGGGGAWMhsSTKNG 108 999*********************9**999**************744.4566788********999866666643444444899*84355666 PP NAM 90 kevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128 ++v++ + + +++ fy +g+ + ++t W+m ey++ LOC_Os01g71790.1 109 QSVTDLGVVVRWCRINYCFYvRGEMGQQRSTGWMMAEYEI 148 78888788999*********888999999*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-31 | 5 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.772 | 14 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-12 | 17 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGKEMNLIRE DEYGGGGVGF EPTEDELMLH FLRPQLRGFA PRVAGAVVEA DPCGAAPWEL 60 LARHGRREEG FFFSARARRK PSVRRTVAGC GGGGGGGGAW MHSSTKNGQS VTDLGVVVRW 120 CRINYCFYVR GEMGQQRSTG WMMAEYEITD PRCYRRADDG EEDDFWVLCH VRKSSRPQAA 180 KISPAKPARR RKPAAAAAAD VRAA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.34520 | 0.0 | flower| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q94CP9 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g71790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g71790 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071060 | 0.0 | AK071060.1 Oryza sativa Japonica Group cDNA clone:J023080K20, full insert sequence. | |||
GenBank | AP003687 | 0.0 | AP003687.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0660F12. | |||
GenBank | AP004073 | 0.0 | AP004073.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0614D08. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641921.1 | 1e-148 | NAC domain-containing protein 48-like isoform X1 | ||||
Refseq | XP_015641928.1 | 1e-148 | NAC domain-containing protein 48-like isoform X2 | ||||
TrEMBL | A0A0E0N7K1 | 1e-147 | A0A0E0N7K1_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q94CP9 | 1e-147 | Q94CP9_ORYSJ; Os01g0946200 protein | ||||
STRING | ORUFI01G47190.1 | 1e-148 | (Oryza rufipogon) | ||||
STRING | OS01T0946200-01 | 1e-148 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13761 | 25 | 28 | Representative plant | OGRP14413 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 3e-12 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g71790.1 |
Entrez Gene | 4325828 |