PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g70870.1
Common NameLOC4326790, Os01g0935000, OSNPB_010935000, P0423A12.42, P0492G09.12
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 477aa    MW: 50107.1 Da    PI: 7.9553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g70870.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-0681103123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cgk F r  nL+ H r H
  LOC_Os01g70870.1  81 FVCEICGKGFQRDQNLQLHRRGH 103
                       89*******************88 PP
2zf-C2H210.60.0018164186123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC  Cgk++  +s+ k H +++
  LOC_Os01g70870.1 164 WKCDRCGKRYAVHSDWKAHSKVC 186
                       58*****************9877 PP
3zf-C2H212.50.00046194212523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       dCg++Fsr++++++H   +
  LOC_Os01g70870.1 194 DCGTVFSRRDSFVTHRAFC 212
                       9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.38E-880103No hitNo description
SMARTSM003550.01281103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.61481103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-581103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355240129159IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-4152185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.38E-8159184No hitNo description
SMARTSM00355160164184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEEFELQQQP YYSKLLLGSP LEIANVDDSD LQLVAGVPSD PPPAPPTAVK KKKKRSLPGT  60
PDPSAEVVAL SPRTLLATNR FVCEICGKGF QRDQNLQLHR RGHNLPWKLR QRGGAGGGGG  120
GEPPRKRVYV CPEASCVHHS PSRALGDLTG IKKHFCRKHG EKKWKCDRCG KRYAVHSDWK  180
AHSKVCGTRE YKCDCGTVFS RRDSFVTHRA FCDALAQENN KLAQPMNMAA VTSALQGQQQ  240
AHHPVADDDD AAGVKSPHLK MFPDVDNIVA AATAGNPLLP PPLSMAGCML SSLAAPLSSP  300
FLPGCKLGVD AARDAAMVFP PPPPPAGSAA AIMSATALLQ KAAELGATTS TGCYGGVAFP  360
AMGIAGGLDR LPAIGHHLAP YDDVVVPAAL QGQTATQLVG FDLGGLLPGQ LYGGGGGAMT  420
RAIGSLMHGG DQHAGVVDRR RGEGVRVVDY MGVDDDDDHG CFDGVGPFGP HIGPWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33160227370Zinc finger protein JACKDAW
5b3h_F3e-33160227370Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.347200.0callus| flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329804140.0
Expression AtlasQ942Y7-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g70870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g70870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703900.0AK070390.1 Oryza sativa Japonica Group cDNA clone:J023050E05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635962.10.0protein indeterminate-domain 12
SwissprotQ9SCQ61e-103IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0E0N7B30.0A0A0E0N7B3_ORYRU; Uncharacterized protein
TrEMBLQ942Y70.0Q942Y7_ORYSJ; Os01g0935000 protein
STRINGORUFI01G46530.10.0(Oryza rufipogon)
STRINGOS01T0935000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-100indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]