PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g70310.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 382aa    MW: 39776.8 Da    PI: 6.1432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g70310.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.7e-12196238754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  LOC_Os01g70310.1 196 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 238
                       79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-16192255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9195238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-16196251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-13196242No hitNo description
CDDcd048738.24E-5310370No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDEAEAAAAA AKMDELAGGG GGGGGDWSYL AADALAAASF TAFPFHHHHH HHHRDVLSAS  60
TPSSLLLNMD AATAAAMFDF QAAFPSSSVP PPPPTTTAAL PPFHDFASSN PFDDAPPPFL  120
APPGQKLGFL GPPGGAFGGG MGWDDDDEIE QSVDASSMGV SASLENAAPV AAGGGGGGGG  180
GGGRGKKKGM PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ  240
RINDLHNELE SAPSSSLTGP SSASFHPSTP TLQTFPGRVK EELCPTSFPS PSGQQATVEV  300
RMREGHAVNI HMFCARRPGI LMSTLRALDS LGLGIEQAVI SCFNGFAMDV FRAEQCRDGP  360
GLGPEEIKTV LLHSAGLQNA M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14191248663Transcription factor MYC2
5gnj_B2e-14191248663Transcription factor MYC2
5gnj_E2e-14191248663Transcription factor MYC2
5gnj_F2e-14191248663Transcription factor MYC2
5gnj_G2e-14191248663Transcription factor MYC2
5gnj_I2e-14191248663Transcription factor MYC2
5gnj_M2e-14191248663Transcription factor MYC2
5gnj_N2e-14191248663Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185203KKKGMPAKNLMAERRRRKK
2197204ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.135950.0callus| flower| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329878030.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g70310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g70310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1025940.0AK102594.1 Oryza sativa Japonica Group cDNA clone:J033098G23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651003.10.0transcription factor ICE1
TrEMBLA0A0E0FYA40.0A0A0E0FYA4_ORYNI; Uncharacterized protein
STRINGONIVA01G48650.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.44e-94bHLH family protein