PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g70110.1
Common NameB1033B05.29, LOC4327234, Os01g0925400, OSJNBa0093F16.3, OSNPB_010925400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 229aa    MW: 24504.7 Da    PI: 9.0865
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g70110.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.85.3e-33211451128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratk.sgyWkatgkdke 91 
                       lp GfrF+Ptdeel+ +yL++kv +++l++ +vi+ +d+ +++PwdLp    +++ e yfF+  +++   +g   +ra    g W+a+gk+k 
  LOC_Os01g70110.1  21 LPIGFRFRPTDEELLLHYLRRKVMSRPLPA-DVIPVADLARLHPWDLP---GEGDGERYFFHLPATSCWrRGGGGSRAGGgGGAWRASGKEKL 109
                       699***************************.99***************...346778999998887776258888886443899********* PP

               NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v++   +++ vg k+tLvf+   ++ g +tdW mheyrl
  LOC_Os01g70110.1 110 VVAPrcGKRPVGAKRTLVFF---RRGGARTDWAMHEYRL 145
                       **99888999**********...567889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-4515167IPR003441NAC domain
PROSITE profilePS5100544.91121167IPR003441NAC domain
PfamPF023651.0E-2022145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAAEAASGGG GGYRMLPQAG LPIGFRFRPT DEELLLHYLR RKVMSRPLPA DVIPVADLAR  60
LHPWDLPGEG DGERYFFHLP ATSCWRRGGG GSRAGGGGGA WRASGKEKLV VAPRCGKRPV  120
GAKRTLVFFR RGGARTDWAM HEYRLLPADD HPPEANDVWV VCRVFKKTTT LAHRRSPPSI  180
RGAPRRRAAA ADDDDMPSSP SSCVTDGGDA GEEGEESSSC SVVASNCP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-271617012168NO APICAL MERISTEM PROTEIN
1ut4_B4e-271617012168NO APICAL MERISTEM PROTEIN
1ut7_A4e-271617012168NO APICAL MERISTEM PROTEIN
1ut7_B4e-271617012168NO APICAL MERISTEM PROTEIN
3swm_A4e-271617015171NAC domain-containing protein 19
3swm_B4e-271617015171NAC domain-containing protein 19
3swm_C4e-271617015171NAC domain-containing protein 19
3swm_D4e-271617015171NAC domain-containing protein 19
3swp_A4e-271617015171NAC domain-containing protein 19
3swp_B4e-271617015171NAC domain-containing protein 19
3swp_C4e-271617015171NAC domain-containing protein 19
3swp_D4e-271617015171NAC domain-containing protein 19
4dul_A4e-271617012168NAC domain-containing protein 19
4dul_B4e-271617012168NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.140470.0callus| flower| leaf| panicle| root| seed| stem
Os.381200.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166394310.0
GEO1567655570.0
Expression AtlasQ5JK15-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g70110.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g70110
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0674500.0AK067450.1 Oryza sativa Japonica Group cDNA clone:J013106M04, full insert sequence.
GenBankAK0684460.0AK068446.1 Oryza sativa Japonica Group cDNA clone:J013153H06, full insert sequence.
GenBankAK2889420.0AK288942.1 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence.
GenBankCT8295910.0CT829591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017E23, full insert sequence.
GenBankCT8295920.0CT829592.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B01, full insert sequence.
GenBankCU4067440.0CU406744.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109J05, full insert sequence.
GenBankGU1203510.0GU120351.1 Oryza sativa Japonica Group clone KCG153D01 NAC4 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627804.11e-164NAC domain-containing protein 83
SwissprotQ9FY933e-38NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0D9YJF51e-162A0A0D9YJF5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0N7111e-162A0A0E0N711_ORYRU; Uncharacterized protein
TrEMBLA2WYK01e-162A2WYK0_ORYSI; Uncharacterized protein
TrEMBLQ5JK151e-162Q5JK15_ORYSJ; NAC4 protein
STRINGOGLUM01G46690.11e-163(Oryza glumipatula)
STRINGORUFI01G45830.11e-163(Oryza rufipogon)
STRINGOS01T0925400-011e-163(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-32NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]