PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g69830.1
Common NameB1455F06.12, LOC4327245, Os01g0922600, OsJ_004487, SPL2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family SBP
Protein Properties Length: 413aa    MW: 42654.3 Da    PI: 9.0874
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g69830.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.42.6e-4092169278
                       -SSTT-----TT-.-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   2 CqvegCeadlsea.keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       C vegC+adls++ ++yhrrhkvCe+hsk++vv+v+g++qrfCqqCsrfh l efDeekrsCr+rL++hn+rrrk+q+
  LOC_Os01g69830.1  92 CSVEGCAADLSKCvRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQP 169
                       ***********9879************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.7E-3384154IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.48789167IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-3790172IPR004333Transcription factor, SBP-box
PfamPF031107.3E-2992166IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDWDAKMPSW DLGTVVGPSG GGGGGGGGGG ALDLKLGAPT SWKTTTTVSA ASAAPAAVAP  60
PPPPPASSSS SAAAAGKRAR AGQGQQAAVP ACSVEGCAAD LSKCVRDYHR RHKVCEAHSK  120
TAVVTVAGQQ QRFCQQCSRF HLLGEFDEEK RSCRKRLDGH NKRRRKPQPD PLNPGNLFAN  180
HHGAARFTSY PQIFSTAASM SPQETKWPAN VVKTEAADVF QEPYYHALHL NGAGAAAAAS  240
IFHHGGNKAR KHHFPFLTAD HGGGAAAASP LFGCQPFTIT PSSESRSSSS SRHSNGKMFA  300
HDGGLDNCAL SLLSDNPTPT AQITIPQPLF AGGGQYGGGG GGDVSLTGLS YVRMAGKDTS  360
ILAKSATTTA TTATTPTTTS AQLQYHGYYH HHVSADQGSS DAAIQALPFS SW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2782166184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149166KRSCRKRLDGHNKRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.112030.0leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329725990.0
Expression AtlasQ0JGI1-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g69830.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g69830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0625810.0AK062581.1 Oryza sativa Japonica Group cDNA clone:001-100-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611358.10.0squamosa promoter-binding-like protein 2
SwissprotQ0JGI10.0SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLA0A0E0N6Y20.0A0A0E0N6Y2_ORYRU; Uncharacterized protein
STRINGORUFI01G45560.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-30SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xie K,Wu C,Xiong L
    Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice.
    Plant Physiol., 2006. 142(1): p. 280-93
    [PMID:16861571]
  3. Yang Z, et al.
    Comparative study of SBP-box gene family in Arabidopsis and rice.
    Gene, 2008. 407(1-2): p. 1-11
    [PMID:17629421]