PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g68860.3 | ||||||||
Common Name | LOC4324354, Os01g0917400, P0413C03.19-1, P0413C03.19-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 238aa MW: 25904.3 Da PI: 9.1274 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.4 | 5e-13 | 132 | 157 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G+ CkF+H++ LOC_Os01g68860.3 132 DQPECQYYMKTGDCKFGAVCKFHHPR 157 689*********************96 PP | |||||||
2 | zf-CCCH | 42.9 | 8e-14 | 177 | 202 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++elC+f++r+G+Ck+G++CkF H+ LOC_Os01g68860.3 177 PGEELCKFYSRYGICKFGANCKFDHP 202 689**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.9E-5 | 130 | 157 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 130 | 158 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 132 | 157 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 133 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 136 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 176 | 204 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-7 | 176 | 203 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 178 | 203 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-11 | 178 | 202 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 180 | 201 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MASSRGSPIY PSVHSSATAG PPYTGTMASW AFPRGSFIPS PRWQNPSNYA PMIVPQGLVQ 60 VPSWNSYTGQ MMPVSSSESR LQSPGAQQTY GTSQQVDASA GNQGMLSPYR SSSYPVPQYA 120 LQRENVFPER PDQPECQYYM KTGDCKFGAV CKFHHPRVRS MPTPDCVLSP VGLPLRPGEE 180 LCKFYSRYGI CKFGANCKFD HPTMAPPMGV YAYGSASTNV PMVRRLLQSP SASAYTS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.19086 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37988765 | 0.0 | ||||
Expression Atlas | Q5JLB5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g68860.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g68860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK098948 | 0.0 | AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence. | |||
GenBank | AK111958 | 0.0 | AK111958.1 Oryza sativa Japonica Group cDNA clone:001-030-A08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622340.1 | 1e-171 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q5JLB5 | 1e-172 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A0P0VC18 | 1e-173 | A0A0P0VC18_ORYSJ; Os01g0917400 protein (Fragment) | ||||
TrEMBL | A0A0P0VC32 | 1e-172 | A0A0P0VC32_ORYSJ; Os01g0917400 protein (Fragment) | ||||
TrEMBL | B7F4E1 | 1e-173 | B7F4E1_ORYSJ; cDNA clone:001-030-A08, full insert sequence | ||||
STRING | OS01T0917400-01 | 1e-171 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 4e-66 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g68860.3 |
Entrez Gene | 4324354 |
Publications ? help Back to Top | |||
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