PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g68860.2
Common NameLOC4324354, Os01g0917400, P0413C03.19-1, P0413C03.19-2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 323aa    MW: 35664.6 Da    PI: 9.1558
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g68860.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.5e-131035227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      ++++C+++++tGtCk+G++CkF+H++
  LOC_Os01g68860.2 10 GQPECQYYLKTGTCKFGPTCKFHHPR 35
                      5799********************96 PP
2zf-CCCH37.73.5e-125781327
                      S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      +++C ++++tG+CkyG++CkF+H++
  LOC_Os01g68860.2 57 EKECAYYLKTGQCKYGNTCKFHHPE 81
                      679********************96 PP
3zf-CCCH39.87.5e-13217242227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+++++tG Ck+G+ CkF+H++
  LOC_Os01g68860.2 217 DQPECQYYMKTGDCKFGAVCKFHHPR 242
                       689*********************96 PP
4zf-CCCH42.31.2e-13262287126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +++elC+f++r+G+Ck+G++CkF H+
  LOC_Os01g68860.2 262 PGEELCKFYSRYGICKFGANCKFDHP 287
                       689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.986836IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5835IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-101035IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-71137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-51436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8685482IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-55481IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-65581IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-105781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-56080IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023215243IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5215242IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9217242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5218242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4221241IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7261288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413261289IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-11263287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6263288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5265286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MKGEYPERMG QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGRVQLNTLG YPLRPSEKEC  60
AYYLKTGQCK YGNTCKFHHP ELFNAMASSR GSPIYPSVHS SATAGPPYTG TMASWAFPRG  120
SFIPSPRWQN PSNYAPMIVP QGLVQVPSWN SYTGQMMPVS SSESRLQSPG AQQTYGTSQQ  180
VDASAGNQGM LSPYRSSSYP VPQYALQREN VFPERPDQPE CQYYMKTGDC KFGAVCKFHH  240
PRVRSMPTPD CVLSPVGLPL RPGEELCKFY SRYGICKFGA NCKFDHPTMA PPMGVYAYGS  300
ASTNVPMVRR LLQSPSASAY TS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.190860.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887650.0
Expression AtlasQ5JLB5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g68860.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g68860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0989480.0AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622340.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A0P0VC320.0A0A0P0VC32_ORYSJ; Os01g0917400 protein (Fragment)
TrEMBLH6BEJ80.0H6BEJ8_ORYSI; CCCH-type zinc finger protein
STRINGOS01T0917400-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-116zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  3. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]