PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g68700.2 | ||||||||
Common Name | LOC4324327, Os01g0915600, OSNPB_010915600, P0004D12.24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 482aa MW: 50044.8 Da PI: 6.6256 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.6e-09 | 287 | 334 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq LOC_Os01g68700.2 287 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 334 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.26E-10 | 281 | 338 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-16 | 281 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.256 | 283 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 285 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 287 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 289 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009072 | anatomy | plant ovary | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MNCGPPDQLP PATAPSCFLN LNWDQSMDAA AGGHLDPALS SMVSSPASNS TGALHGISPQ 60 PHYGGGTPLS SPPKLNLSMM GQFHHYAAPP QVGGGGGGGG GLPILENLMP MGHLDQFLAD 120 PGFAERAARL SGFDARGGGG GGGYGGAGPA QFGLPDAGAA GASKEMELGN TRDESSVSDP 180 APGGAEIPPK GASDGNARKR KASGKGKGKD SPMSTSAAKE DSSGKRCKST EESNAAAEEN 240 SGKGKAAQSN SENGGGKKQG KDSSSKPPEP PKDYIHVRAR RGEATDSHSL AERVRREKIS 300 QRMKLLQDLV PGCNKVVGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPQ LDFNNLPNLL 360 AKDMHQSCSP LQSSHFPLET SGAPLPYINQ PQQGNPLGCG LTNGMDNQGS MHPLDPAFCR 420 PMGSHHPFLN GVSDAASQVG AFWQDDLQSV VQMDMGQSQE IATSSNSYNG SLQTVHMKME 480 L* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5763 | 0.0 | callus| flower| leaf| panicle| root| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32986272 | 0.0 | ||||
Expression Atlas | Q5N802 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00660 | PBM | Transfer from Pp3c6_9520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g68700.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g68700 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101063 | 0.0 | AK101063.1 Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621927.1 | 0.0 | transcription factor bHLH77 isoform X2 | ||||
TrEMBL | A0A0E0N6Q7 | 0.0 | A0A0E0N6Q7_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8A855 | 0.0 | B8A855_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q5N802 | 0.0 | Q5N802_ORYSJ; BHLH transcription factor | ||||
STRING | ORUFI01G45060.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0915600-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-60 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g68700.2 |
Entrez Gene | 4324327 |
Publications ? help Back to Top | |||
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