PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g68700.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 485aa    MW: 50206.8 Da    PI: 6.6256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g68700.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09287334455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  LOC_Os01g68700.1 287 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 334
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.30E-10281338No hitNo description
SuperFamilySSF474591.44E-16281352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256283333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16285351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6287334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10289339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MNCGPPDQLP PATAPSCFLN LNWDQSMDAA AGGHLDPALS SMVSSPASNS TGALHGISPQ  60
PHYGGGTPLS SPPKLNLSMM GQFHHYAAPP QVGGGGGGGG GLPILENLMP MGHLDQFLAD  120
PGFAERAARL SGFDARGGGG GGGYGGAGPA QFGLPDAGAA GASKEMELGN TRDESSVSDP  180
APGGAEIPPK GASDGNARKR KASGKGKGKD SPMSTSAAKE DSSGKRCKST EESNAAAEEN  240
SGKGKAAQSN SENGGGKKQG KDSSSKPPEP PKDYIHVRAR RGEATDSHSL AERVRREKIS  300
QRMKLLQDLV PGCNKVVGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPQ LDFNNLPNLL  360
AKDMHQSCSP LQSSHFPLET SGAPLPYINQ PQQGNPLGCG LTNGMDNQGS MHPLDPAFCR  420
PMGSHHPFLN GVSDAASQVG AFWQDDLQSV VQMDMGQSQE IATSSNSYNG RIVANSPHEN  480
GALT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.57630.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329862720.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g68700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g68700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010630.0AK101063.1 Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621926.10.0transcription factor bHLH77 isoform X1
TrEMBLI1NUM50.0I1NUM5_ORYGL; Uncharacterized protein
STRINGORGLA01G0356500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-60bHLH family protein