PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g68160.1 | ||||||||
Common Name | LOC4324867, Os01g0909500, P0456E05.24-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 321aa MW: 35551.2 Da PI: 5.0392 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.3 | 6.2e-06 | 293 | 316 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ C+k+F+++ Lk H + H LOC_Os01g68160.1 293 YVCNSCKKTFNSSGALKDHSKAkH 316 9******************88766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.7E-4 | 293 | 312 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.032 | 293 | 320 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0031 | 293 | 316 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 295 | 316 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MDVDFWGVVI EPCNKKEIFC PEDTLYHLTS VALDEAYGLK DSNVKVFVEV NDEKFAIGTL 60 SSKRHPHIKV DFCFKKNFQL FHTSLISKVA FCGYQVKNLG KFTDSEGDES DEEVPPDNMI 120 KEAQKSKLPA KSATVASAMQ KAFVKEIEHY EKSKADDDNN ERYRDISVVG ESTGNEDSSD 180 DADYEGKSSD EEETTAKEGE STDEKETPAK EGESSDEEET PAKNTKEENE PVVTPLKTFP 240 HEMAKIEAPI TDNKTGTNTS KRGSHLQVTN PHPAKQAKRT PIKNDTPKRS ASYVCNSCKK 300 TFNSSGALKD HSKAKHPATN * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 284 | 289 | DTPKRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.9025 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985118 | 0.0 | ||||
Expression Atlas | Q5N885 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g68160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g68160 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069641 | 0.0 | AK069641.1 Oryza sativa Japonica Group cDNA clone:J023026P04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616378.1 | 0.0 | histone deacetylase HDT2 isoform X2 | ||||
TrEMBL | Q5N885 | 0.0 | Q5N885_ORYSJ; Os01g0909500 protein | ||||
STRING | ORGLA01G0351900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11173 | 20 | 22 | Representative plant | OGRP1053 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 7e-13 | histone deacetylase 2C |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g68160.1 |
Entrez Gene | 4324867 |