PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g67970.1
Common NameB1417F08.20, JMJ705, LOC4324980, Os01g0907400, OsJ_04472, P0497A05.7
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 1287aa    MW: 142049 Da    PI: 8.8847
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g67970.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00111921214323
                        ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                        Cp   Cgk F ++ +L +H ++H
  LOC_Os01g67970.1 1192 CPvkGCGKKFFSHKYLLQHRKVH 1214
                        9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.6E-152465IPR003349JmjN domain
PROSITE profilePS5118314.2012566IPR003349JmjN domain
PfamPF023752.5E-132659IPR003349JmjN domain
SMARTSM005584.6E-51198367IPR003347JmjC domain
PROSITE profilePS5118437.486201367IPR003347JmjC domain
SuperFamilySSF511974.94E-27212381No hitNo description
PfamPF023739.4E-39231350IPR003347JmjC domain
SMARTSM003551711671189IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.61211901219IPR007087Zinc finger, C2H2
SMARTSM003550.6211901214IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.7E-611921218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011921214IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-912061246No hitNo description
Gene3DG3DSA:3.30.160.602.3E-812191244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.32312201249IPR007087Zinc finger, C2H2
SMARTSM003550.002712201244IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012221244IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-712381272No hitNo description
Gene3DG3DSA:3.30.160.608.5E-912451273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.1812501281IPR007087Zinc finger, C2H2
SMARTSM003551.712501276IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012521276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0055114Biological Processoxidation-reduction process
GO:0071557Biological Processhistone H3-K27 demethylation
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0051213Molecular Functiondioxygenase activity
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 1287 aa     Download sequence    Send to blast
MRPSPPPAAP AAEPVPPWLR SLPVAPEFRP TAAEFADPVS YILKIEPAAA PYGICKVVPP  60
LPPPPKKATF SNLSRSFAAL HPDDRSPSFP TRHQQVGLCP RRTRPGLKPV WRSSHRYTLP  120
QFESKAGATR KSLLAGLNFP ASRQLTPLDH EVLFWRASAD RPIVVEYGSD MSGSGFSPCA  180
AQPQPPPQQQ PTARAAAHLG ETAWNMRGVA RSPGSLLRFM PEDVPGVTTP MLYVGMMFSW  240
FAWHVEDHDL HSLNYMHLGA AKTWYGVPRD AALAFEDVVR EHGYGGEVNP LETFATLGQK  300
TTVMSPEVLV ESGIPCCRLV QNAGEFVVTF PGSYHCGFSH GFNCGEASNI ATPEWLRIAK  360
EAAIRRASIN RPPMVSHYQL LYDLALSMRF REPSNGEMET RSSRIKEKKK CEGEQLVKKM  420
FIQNVIEDNE LLSHLLNDGS SCIILPANAH DGPGLSTLRS TDQSNMNSRI SHNLCSREEA  480
PEASGCLSPN RNGDTRNCIS SDTHNMEGDK GDIMSATGLL DQGLLSCVTC GILSFSCVAV  540
LKPRDSTARY LMSADSNSIN NQLSISGGSI LADAPTNERN GVISRPYSEH CCNEIMADDA  600
EIDKNSALDL LAFAHGGQPD PEEDPLEKIL KIAHGINKSQ PNSSNNVGCV GTKLSSSSTE  660
RQERPSSQNA HCNGSSVISN GPKGVRTRNK YQLKMVLSEG FQAKDIYSAK EKKVQSEPSS  720
SKGDVKETID VSGTENDVGC KSTTISVSEH RGSTKNMYSV KEKKVQSKPS SLKGTVKETV  780
DVSGTENDAR CKSITISVSE HRGSTPMTNS LAASIVKPDK DSSRMHVFCL EHAIEVEKQL  840
HAIGGSNIML ICRPEYPKIE AEARLLGEEM GLVYDWKGIH FKEANMEDRQ KIQEVLRDEE  900
AIPTSSDWAV KLGINLYYSA NLAKSPLYNK QMPYNRVIYR AFGCDSPNDS PVMFNTCERK  960
QSHQKKIVVA GRWCGKVWMS KQVHPYLAHR VESQEAEEAD RICSYHFDEK HKAEPVGNSS  1020
RVEASKRKSS SLTDVTESSN RRGEIPGEET NTKRPKHSQE NNLRALETAA EVVVPSPAGT  1080
GLRVSSRIAN RANKLKSKME KEDVPSSRPK SNIKEKSSHA SGQKSNVQEA NANSASHLRA  1140
MPPKQKAEAE AKKQIRTPKP PKQAVEYSCD IEGCSMSFRT KRDLSLHKSD ICPVKGCGKK  1200
FFSHKYLLQH RKVHTDDRPL TCPWKGCNMA FKWPWARTEH LRVHTGDRPY VCHEPGCAQT  1260
FRFVSDFSRH KRKTGHSVKK KKKAKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-73183818346Transcription factor jumonji (Jmj) family protein
6ip4_A1e-73183818346Arabidopsis JMJ13
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.527270.0callus| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329789760.0
Expression AtlasQ5N712-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flag leaves. Expressed at low levels in roots, shoots, stems and panicles. {ECO:0000269|PubMed:24280387}.
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g67970.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Disruption Phenotype ? help Back to Top
Source Description
UniProtDISRUPTION PHENOTYPE: Reduced plant height, panicle length, spikelets per panicle and spikelet fertility. Increased susceptibility to the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g67970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689520.0AK068952.1 Oryza sativa Japonica Group cDNA clone:J023001N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621377.10.0lysine-specific demethylase JMJ705
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A0E0N6H60.0A0A0E0N6H6_ORYRU; Uncharacterized protein
STRINGOS01T0907400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Representative plantOGRP44011217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li T, et al.
    Jumonji C domain protein JMJ705-mediated removal of histone H3 lysine 27 trimethylation is involved in defense-related gene activation in rice.
    Plant Cell, 2013. 25(11): p. 4725-36
    [PMID:24280387]