PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g67890.1
Common NameB1417F08.7, Os01g0906300, OSNPB_010906300, P0497A05.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 484aa    MW: 52837.3 Da    PI: 6.9421
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g67890.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF321.6e-10123175150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT...SEEEEEE CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst...gklyeys 50 
                       k ien+ +r+ tf +Rr g+  K +   +LC++e+++i +++    g++ +++
  LOC_Os01g67890.1 123 KLIENEKKRKATFKNRRDGLKQKVSQFATLCGVEALLICVAPAvagGEVTTWP 175
                       569*************************************9854448888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.01E-15115193IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.325115163IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-8115176IPR002100Transcription factor, MADS-box
CDDcd002661.37E-16117195No hitNo description
PfamPF003191.0E-13125174IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MVRTPTIIPL RPNYSPPGDG AAFRREPATY SRFPPAAARN ECDLTFGQER KREGMKGKPP  60
ISRKIIYNHR DFVSMGERFV ALCFIFTMSP CIDATLFVRV VLDFVRREET RRDEMPRTKL  120
VLKLIENEKK RKATFKNRRD GLKQKVSQFA TLCGVEALLI CVAPAVAGGE VTTWPPDRAA  180
VLDLIARLRA TPPEKIRQLH NTQSQLRDDL DKQQRLLLKV QKCGADDVLT PWHCSLYDLS  240
LDGLNALHDT LSETLDRAHR RIAALGGGHG HVHDDAASSS EFSVPAPAPH AVALPDNAFD  300
FPFAPSNTGP VVGAHYFYPL HDTLPLPLPL PQQVPGQHPP CIAYQMPPPP CLAYQMPPPP  360
PPSLAAAPFD QCMSATGFMD SNPYATHIMH GGSTAAGLLD DHGQIFSAGA GYDDDDILGH  420
GFGFAAGTGY DLDPRMATAD VWPMNTLNNI PNDGGIGFQL QNDLKWMLPG GSNGSNLQGG  480
FQI*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8LIX0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g67890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g67890
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033800.0AP003380.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0497A05.
GenBankAP0065310.0AP006531.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1417F08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ8LIX00.0Q8LIX0_ORYSJ; Os01g0906300 protein
STRINGONIVA01G46080.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143511825
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-11M-type_MADS family protein