PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g67830.1 | ||||||||
Common Name | LOC4325025, Os01g0905400, OsJ_04461, OSJNOa108M02.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 674aa MW: 75403 Da PI: 6.2214 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.1 | 9.1e-15 | 82 | 169 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk++ +++++ + +p +fa+++ + + + led g +W+v+l +++ ++ GWk+Fv ++++ +g+f+vF+ + rs f + LOC_Os01g67830.1 82 FFKIM--VGYFSEN-MDIPLPFARTITDMT--GSNVYLEDAYGLRWRVRL--YLHDDVLSFGHGWKNFVLDHDISVGEFLVFRQIARSVF--T 165 66666..5566666.9**********6443..337***************..999999*************************9998999..8 PP EEEE CS B3 94 vkvf 97 v++f LOC_Os01g67830.1 166 VQIF 169 8877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.77E-22 | 76 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-19 | 77 | 172 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.957 | 79 | 172 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.98E-17 | 80 | 169 | No hit | No description |
Pfam | PF02362 | 9.3E-12 | 82 | 169 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.0E-13 | 82 | 172 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.32 | 576 | 671 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-12 | 576 | 669 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-14 | 577 | 667 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.98E-10 | 577 | 669 | No hit | No description |
SMART | SM01019 | 0.0035 | 579 | 671 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-7 | 604 | 667 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MVELIKVPKI EQEEGNADSH GKEKADVVHE EKTEKVKRRR KRVSDPQRKK ACVDCTKRCI 60 RIHGMASSSS EKARPTPTLP SFFKIMVGYF SENMDIPLPF ARTITDMTGS NVYLEDAYGL 120 RWRVRLYLHD DVLSFGHGWK NFVLDHDISV GEFLVFRQIA RSVFTVQIFA ISACERIHLC 180 ERNKRQSRKR KPGRKTGYPA NNQMVKVSSK DVVKRRKKQR TDEQIYDLDP RQHDMPVRVC 240 IDSGSEQRCS ESSVKELDAA PDKSHAVVQV PATECNADPS YNAAGMKTIK NLEAIGASSS 300 TKDVTWDANK SEDYPSFSYP ESSNVMTADK ESERSHQDRP MQLYCELGLE DGNAETENCE 360 NSNVLENAEL RTPLAMMDLN EVGIDDIFLS ADIYEFDSDF CSPEAFSVDV NTEGLVSNGR 420 TPGDCFGVPE TSRCLENKQM TDVPRTSTDD GSIAVHGIDI NALPSNTYPD IGQGNTYPDI 480 DAAPDDCKKD KDVLHSECNK VAQKAHSSVK QDITKDGPRQ IAAEIMSSDP KTCELTYVRK 540 NSVQPGISSV SQWNNSKGQE SGGTKSCVVL AVAANSKKFC ITIPPPDQTW LELPRRLPVL 600 PRTKKQARKI LILKDPSMRL WPVLYQCTPK FNGFIAGWAD ISRENNLREG DTCEFELCSN 660 SELSFQVLVP NLQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 49 | RRRKRVSDPQRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.51723 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32973548 | 0.0 | ||||
Expression Atlas | Q5N6V0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g67830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g67830 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063530 | 0.0 | AK063530.1 Oryza sativa Japonica Group cDNA clone:001-117-B02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645658.1 | 0.0 | B3 domain-containing protein Os01g0905400 | ||||
Swissprot | Q5N6V0 | 0.0 | Y1054_ORYSJ; B3 domain-containing protein Os01g0905400 | ||||
TrEMBL | A0A0D9YIU6 | 0.0 | A0A0D9YIU6_9ORYZ; Uncharacterized protein | ||||
STRING | OS01T0905400-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11461 | 32 | 40 | Representative plant | OGRP8972 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 3e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g67830.1 |
Entrez Gene | 4325025 |
Publications ? help Back to Top | |||
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