PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g67770.1 | ||||||||
Common Name | LOC4325022, ORR6, Os01g0904700, OsJ_04457, OSJNOa013M08.3, RR26 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARR-B | ||||||||
Protein Properties | Length: 583aa MW: 64813.5 Da PI: 4.8449 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81.7 | 8.4e-26 | 192 | 245 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+gLt+e+v+SHLQkYRl LOC_Os01g67770.1 192 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 245 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 80.5 | 5.4e-27 | 12 | 120 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 vl+vdD+p+ +++l+++l+k y ev+++ ++ al++l+e++ +D+++ D++mp+mdG++ll++i e +lp+i+++ ge + + + ++ LOC_Os01g67770.1 12 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARVALDILRERKnkFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSRVMKGVQ 102 89*********************.***************877777**********************6654.8******************** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 Ga d+l Kp+ ++el++ LOC_Os01g67770.1 103 HGACDYLLKPVRMKELRN 120 ***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 7.2E-183 | 2 | 575 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 5.98E-35 | 9 | 133 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.0E-43 | 9 | 146 | No hit | No description |
SMART | SM00448 | 1.4E-31 | 10 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.718 | 11 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.5E-24 | 12 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.28E-29 | 13 | 125 | No hit | No description |
SuperFamily | SSF46689 | 3.49E-18 | 189 | 249 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.161 | 189 | 248 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-28 | 191 | 250 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-22 | 192 | 245 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.1E-8 | 194 | 244 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MDATAFPYGL RVLVVDDDPT WLKILEKMLR KCSYEVTTCG LARVALDILR ERKNKFDIVI 60 SDVNMPDMDG FKLLEHIGLE MDLPVIMMSI DGETSRVMKG VQHGACDYLL KPVRMKELRN 120 IWQHVYRKKM HEVKEIEGND SCDDLQILRN SFEGLDEKSL FMRSDSDTMR KRKDVDKDHA 180 DQESSDGNTV KKARVVWSVD LHQKFVNAVN QIGFDKVGPK KILDLMNVPG LTRENVASHL 240 QKYRLYLSRL QKQNEERILG AARQDFSHKG TSENLNLRSS FQEQPSNIAN GYPHASQNIQ 300 TQANMLDSQL EDTKSTVPLP VPDKKRTLAS DAADSQNVTS ASSLGGVLSF KSMPVNQDRK 360 PSETMILECQ AWTGGIPSKQ FMQYPKHNHE RCDLLGDYSC LPKPDLEHPV GPSNLYAPPP 420 LISMSCGMEG DARDFSDVKP AIMDCIKSLS PALTCTVDSV SVQLSDSVVT SIDGDLKSSG 480 VDGLPSIKDC CLDQTNSQGS LRPSQEPSII GSTELASLPE DLPSYPLHGV SLENIGLSSI 540 DLLNYSDAMI LSGLQSNWYD DLEFSSEMMD YPSIDECLFA SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-17 | 191 | 250 | 4 | 63 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49428 | 0.0 | leaf| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32972268 | 0.0 | ||||
Expression Atlas | Q5N6V8 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g67770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: Dwarf, narrow leaf, low tillering, late heading and low fertility phenotypes. {ECO:0000269|PubMed:16891544}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g67770 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK062250 | 0.0 | AK062250.1 Oryza sativa Japonica Group cDNA clone:001-047-G01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622017.1 | 0.0 | two-component response regulator ORR26 isoform X1 | ||||
Swissprot | Q5N6V8 | 0.0 | ORR26_ORYSJ; Two-component response regulator ORR26 | ||||
TrEMBL | A0A0D3EXJ9 | 0.0 | A0A0D3EXJ9_9ORYZ; Two-component response regulator | ||||
TrEMBL | A0A0E0N6F7 | 0.0 | A0A0E0N6F7_ORYRU; Two-component response regulator | ||||
TrEMBL | I1NUE7 | 0.0 | I1NUE7_ORYGL; Two-component response regulator | ||||
STRING | ORUFI01G44260.2 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0904700-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA01G0348700.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART01G40940.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5900 | 37 | 52 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-113 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g67770.1 |
Entrez Gene | 4325022 |
Publications ? help Back to Top | |||
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