PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g67650.1 | ||||||||
Common Name | B1065G12.22, P0551C06.29 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 533aa MW: 57449.2 Da PI: 6.5058 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 345.7 | 7.8e-106 | 157 | 531 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kal..ppsetsekn..sseelaalklfsevs 88 lv+lL++cAeav+ +d ++a alL +l+ a +g+++qR+a++f+++La rl + a + + s+ + al l +e++ LOC_Os01g67650.1 157 LVQLLVACAEAVACRDRAQAAALLRELQAGAPVHGTAFQRVASCFVQGLADRLPLAHPPALgPASmaFCIPPSSCAgrDGARGEALALAYELC 249 689*************************************************987444332122211222222222345667788889***** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpf 176 P+l+f+h++aN +lea+ege+ vH++D++++ G QW Ll+ La+R++g+p ++R+Tgvg+ + ++++++g+ L+ +Ae lg+ + LOC_Os01g67650.1 250 PYLRFAHFVANACMLEAFEGESNVHVVDLGMTlgldRGHQWRGLLDGLAARASGKPaRVRVTGVGA----RMDTMRAIGRELEAYAEGLGMYL 338 ****************************98762222567*************77666*********....9********************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 ef+ + + le+l++++L v+ +Ea+a+n+vl+lh++++es + +vL+++++lsP+ +v+veq+a hn++ Fl rf+eal+yy+alfd LOC_Os01g67650.1 339 EFRG-INRGLESLHIDDLGVDADEAVAINSVLELHSVVKESRGALN---SVLQTIRKLSPRAFVLVEQDAGHNGPFFLGRFMEALHYYAALFD 427 ****.799******************************88877777...8******************************************* PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361 +l+a lpr + r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++ ++a+ l + + + gy+v ee+g+lvlg LOC_Os01g67650.1 428 ALDAALPRYDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIKMA--AKAREWLDENAgGGGYTVAEEKGCLVLG 518 ************************************************************754..467777777776999************* PP GRAS 362 WkdrpLvsvSaWr 374 Wk++p++++S+W+ LOC_Os01g67650.1 519 WKGKPVIAASCWK 531 ************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.829 | 131 | 512 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.7E-103 | 157 | 531 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MGMSPEPCNS ISDCSQQQSH HLTLTQQQDS TIICTNQELD YYYRFYDVDE AAFDGNEVEL 60 VSRFSKVTRM DHMISSPYQP TWSPAQAAVD VVGSSETSRV RKKRFWDVLE SCKQKVEAME 120 AMDTPATATF RVGAGDGGGG GGGGAGGGGG GADGMRLVQL LVACAEAVAC RDRAQAAALL 180 RELQAGAPVH GTAFQRVASC FVQGLADRLP LAHPPALGPA SMAFCIPPSS CAGRDGARGE 240 ALALAYELCP YLRFAHFVAN ACMLEAFEGE SNVHVVDLGM TLGLDRGHQW RGLLDGLAAR 300 ASGKPARVRV TGVGARMDTM RAIGRELEAY AEGLGMYLEF RGINRGLESL HIDDLGVDAD 360 EAVAINSVLE LHSVVKESRG ALNSVLQTIR KLSPRAFVLV EQDAGHNGPF FLGRFMEALH 420 YYAALFDALD AALPRYDARR ARVEQFHFGA EIRNVVGCEG AARVERHERA DQWRRRMSRA 480 GFQSVPIKMA AKAREWLDEN AGGGGYTVAE EKGCLVLGWK GKPVIAASCW KC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-56 | 164 | 530 | 25 | 377 | Protein SCARECROW |
5b3h_D | 4e-56 | 164 | 530 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q8RZ73 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g67650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g67650 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003791 | 0.0 | AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12. | |||
GenBank | AP006757 | 0.0 | AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646199.1 | 0.0 | DELLA protein RGL1 | ||||
TrEMBL | Q8RZ73 | 0.0 | Q8RZ73_ORYSJ; Gibberellin response modulator-like protein | ||||
STRING | ONIVA01G45890.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5640 | 33 | 54 | Representative plant | OGRP7052 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 8e-60 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g67650.1 |