PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g67480.1
Common NameLOC4325038, Os01g0900800, OSNPB_010900800, P0035F12.17-1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 388aa    MW: 40697.4 Da    PI: 8.1181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g67480.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11321366655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L++l+P+     +k  + +++L  Av YIk+Lq
  LOC_Os01g67480.1 321 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDIAVTYIKELQ 366
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.941315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-14318375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-11319370No hitNo description
Gene3DG3DSA:4.10.280.109.3E-15320376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9321366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12321371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MNRMTAPHGG MPPPPMPAAG GLARYGSAPG SLLASIADSV IRGRGVGVVD QLHHHQHQHQ  60
LPPPPPPQQQ QMVGRYFSAE SSGLTSCESS CRTTTTTSTA AAADVGRHPL ERAYGGSGEI  120
HVDASSAAVP LFRHSSSPAG LLSRLMADPH GNGMAATRGM GGYSGGGGDA GAMAHRRLSS  180
QWSFSRQDLP QISEMGGLIP DIGESIVTGG GGNSSSDGAG HGAQSSSFLS SRNFSMSSWD  240
DTNSIMFSPP SSSKKARVAA AAAGDHGDDM VSSFSNIDSQ FGLSKQSSLE MAGMDDFLQL  300
QPDSVACRAR AKRGCATHPR SIAERERRTR ISKRLKKLQD LVPNMDKQTN TSDMLDIAVT  360
YIKELQGQVE KLKHDQANCT CSGKHDC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.577981e-172callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379910341e-172
Expression AtlasQ5N8U8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g67480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g67480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682540.0AK068254.1 Oryza sativa Japonica Group cDNA clone:J013149F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613853.10.0transcription factor bHLH128
TrEMBLA0A0E0FX470.0A0A0E0FX47_ORYNI; Uncharacterized protein
TrEMBLB8A7R50.0B8A7R5_ORYSI; Uncharacterized protein
TrEMBLQ5N8U80.0Q5N8U8_ORYSJ; Os01g0900800 protein
STRINGOS01T0900800-010.0(Oryza sativa)
STRINGONIVA01G45730.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-47bHLH family protein