PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g67410.1
Common NameLOC4325035, Os01g0899800, OSNPB_010899800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 696aa    MW: 71840.4 Da    PI: 7.0671
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g67410.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.96e-14282341155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +   g  ++ +++ +g ++ +e+Aa+a++ a++k++g
  LOC_Os01g67410.1 282 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVLIGGYDKEEKAARAYDLAALKYWG 341
                       57*******************666664478446*************************98 PP
2AP246.77.9e-15384435155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  LOC_Os01g67410.1 384 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 435
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-11282341IPR001471AP2/ERF domain
CDDcd000182.34E-18282351No hitNo description
SuperFamilySSF541712.16E-16282351IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-14283350IPR001471AP2/ERF domain
PROSITE profilePS5103218.321283349IPR001471AP2/ERF domain
SMARTSM003804.3E-26283355IPR001471AP2/ERF domain
PRINTSPR003673.7E-6284295IPR001471AP2/ERF domain
PfamPF008479.8E-10384435IPR001471AP2/ERF domain
CDDcd000185.36E-23384445No hitNo description
SuperFamilySSF541711.11E-17384445IPR016177DNA-binding domain
PROSITE profilePS5103219.045385443IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-18385444IPR001471AP2/ERF domain
SMARTSM003801.5E-33385449IPR001471AP2/ERF domain
PRINTSPR003673.7E-6425445IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MATMNNWLAF SLSPQDQLPP SQTNSTLISA AATTTTAGDS STGDVCFNIP QDWSMRGSEL  60
SALVAEPKLE DFLGGISFSE QQHHHGGKGG VIPSSAAACY ASSGSSVGYL YPPPSSSSLQ  120
FADSVMVATS SPVVAHDGVS GGGMVSAAAA AAASGNGGIG LSMIKNWLRS QPAPQPAQAL  180
SLSMNMAGTT TAQGGGAMAL LAGAGERGRT TPASESLSTS AHGATTATMA GGRKEINEEG  240
SGSAGAVVAV GSESGGSGAV VEAGAAAAAA RKSVDTFGQR TSIYRGVTRH RWTGRYEAHL  300
WDNSCRREGQ TRKGRQVLIG GYDKEEKAAR AYDLAALKYW GPTTTTNFPV NNYEKELEEM  360
KHMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE  420
EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SILDSAALPV GTAAKRLKDA EAAAAYDVGR  480
IASHLGGDGA YAAHYGHHHH SAAAAWPTIA FQAAAAPPPH AAGLYHPYAQ PLRGWCKQEQ  540
DHAVIAAAHS LQDLHHLNLG AAAAAHDFFS QAMQQQHGLG SIDNASLEHS TGSNSVVYNG  600
DNGGGGGGYI MAPMSAVSAT ATAVASSHDH GGDGGKQVQM GYDSYLVGAD AYGGGGAGRM  660
PSWAMTPASA PAATSSSDMT GVCHGAQLFS VWNDT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.651510.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160138430.0
Expression AtlasA0A0P0VBN0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g67410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g67410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634444.10.0AP2-like ethylene-responsive transcription factor PLT1
TrEMBLA0A0P0VBN00.0A0A0P0VBN0_ORYSJ; Os01g0899800 protein
STRINGOS01T0899800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-118AINTEGUMENTA-like 5