PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g65900.1 | ||||||||
Common Name | B1065E10.4, LOC4324850, Os01g0881500, OsJ_04302, OSNPB_010881500, P0018C10.63 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 554aa MW: 61798.5 Da PI: 4.5501 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 428.3 | 6.1e-131 | 184 | 553 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++lL++cA a+s+ + +aqa+++ l++++s +gdp qR+aay++e+Laar++ s++++ykal+++e + + +l+a+++++e++P+++f+ LOC_Os01g65900.1 184 KQLLFDCAMALSDYNVDEAQAIITDLRQMVSIQGDPSQRIAAYLVEGLAARIVASGKGIYKALSCKEPP---TLYQLSAMQILFEICPCFRFG 273 589*****************************************************************9...89999**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 +++aN aIlea +ge+rvHiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pe++ l+ +g+rL+k+Ae +g++fef++ v + LOC_Os01g65900.1 274 FMAANYAILEACKGEDRVHIIDFDINQGSQYITLIQFLKNNANKPRHLRITGVDDPETVqrTVGGLKVIGQRLEKLAEDCGISFEFRA-VGAN 365 *********************************************************99778889***********************.799* PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 + d+++ +L++ pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++F +rf e +yy+alfdsl+a+lpre LOC_Os01g65900.1 366 IGDVTPAMLDCCPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFQTRFREVYDYYAALFDSLDATLPRE 458 ********************************************************************************************* PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 s +r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF+p p+s+++ + +++ll+ + ++ y+ ee++g l +gW +++L++ S LOC_Os01g65900.1 459 SPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMTMAGFTPCPFSSNVISGIRSLLKSYCDR-YKFEEDHGGLHFGWGEKTLIVSS 550 *******************************************************************66.*********************** PP GRAS 372 aWr 374 aW+ LOC_Os01g65900.1 551 AWQ 553 **6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.078 | 157 | 534 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-128 | 184 | 553 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 554 aa Download sequence Send to blast |
MSFIRRADPS TTYADNLYIH KFGTPNSNFA ARRYASDTQL FRYGPEPYNP ENSFYNQQAS 60 PMPYMVTADG HSPSSADNSC SDVAKDSPLV SNVSQQNSQS ISDNQSSELE VEFDEDDIRM 120 KLQELEHALL DDSDDILYEI SQAGSINDEW ADPMKNVILP NSPKESESSI SCAGSNNGEP 180 RTPKQLLFDC AMALSDYNVD EAQAIITDLR QMVSIQGDPS QRIAAYLVEG LAARIVASGK 240 GIYKALSCKE PPTLYQLSAM QILFEICPCF RFGFMAANYA ILEACKGEDR VHIIDFDINQ 300 GSQYITLIQF LKNNANKPRH LRITGVDDPE TVQRTVGGLK VIGQRLEKLA EDCGISFEFR 360 AVGANIGDVT PAMLDCCPGE ALVVNFAFQL HHLPDESVSI MNERDQLLRM VKGLQPKLVT 420 LVEQDANTNT APFQTRFREV YDYYAALFDS LDATLPRESP DRMNVERQCL AREIVNILAC 480 EGPDRVERYE VAGKWRARMT MAGFTPCPFS SNVISGIRSL LKSYCDRYKF EEDHGGLHFG 540 WGEKTLIVSS AWQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-63 | 190 | 552 | 26 | 378 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.9902 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32977475 | 0.0 | ||||
Expression Atlas | Q8RZQ6 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g65900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g65900 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK060833 | 0.0 | AK060833.1 Oryza sativa Japonica Group cDNA clone:001-034-C07, full insert sequence. | |||
GenBank | AK067457 | 0.0 | AK067457.1 Oryza sativa Japonica Group cDNA clone:J013106L10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610828.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | Q8RZQ6 | 0.0 | Q8RZQ6_ORYSJ; Os01g0881500 protein | ||||
STRING | OS01T0881500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5175 | 38 | 60 | Representative plant | OGRP8262 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g65900.1 |
Entrez Gene | 4324850 |
Publications ? help Back to Top | |||
---|---|---|---|
|