PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g64790.1
Common NameOs01g0868000, P0677H08.10
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 352aa    MW: 36316.6 Da    PI: 6.3474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g64790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.9e-20129178255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  LOC_Os01g64790.1 129 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 178
                       7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.3E-36129192IPR001471AP2/ERF domain
PfamPF008471.1E-13129178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-33129187IPR001471AP2/ERF domain
PROSITE profilePS5103225.686129186IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-22129187IPR016177DNA-binding domain
PRINTSPR003671.1E-11130141IPR001471AP2/ERF domain
CDDcd000187.88E-15137188No hitNo description
PRINTSPR003671.1E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MTVAGASELM SGYYQAQEMS TMVSALARVV AGGGGGGGDG DGDQWAWSSP SPSSSAAAAA  60
ARGVQERRRE EQAMHELAGY ACGGAPSPEF AGSEQSSDTQ SASAATMDEH HSPVGGGGNA  120
EGPDTPRRRY RGVRQRPWGK WAAEIRDPHK AARVWLGTFE TAEAAARAYD EAALRFRGSR  180
AKLNFPEDAR LYPTAATTTT AAPPPAPVAA ASPSAAIYPG ASQSAEYLRY QMLLQGRLTT  240
ATPNQGTLLP FYGGGGGGGS MTNPYGGGGG GAMSGFLGSY YSFPTPSVSV ATVPSSTSSA  300
PGNYYSSHGG SHQSMSAAEE WNWENALVYP ATAASWSESS YHHHPPPPHT Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23130186663ATERF1
3gcc_A2e-23130186663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.758070.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5N965
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g64790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g64790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032860.0AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613619.10.0ethylene-responsive transcription factor ABR1
TrEMBLA2WXC50.0A2WXC5_ORYSI; Uncharacterized protein
TrEMBLQ5N9650.0Q5N965_ORYSJ; AP2 domain transcription factor-like
STRINGORGLA01G0324200.11e-179(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-20ethylene response factor 110