PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g64560.2
Common NameLOC4324795, Os01g0865600, OSNPB_010865600, P0505D12.13
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 904aa    MW: 97278.1 Da    PI: 6.3652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g64560.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000277067431355
                       HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       R+ i +++ eLre++P++      K s  + Lek+++++  Lq
  LOC_Os01g64560.2 706 RQMIQDRIKELREIVPNS-----AKCSIDTLLEKTIKHMLFLQ 743
                       77899************6.....5899999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-357192IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.19E-4687744No hitNo description
PROSITE profilePS5088810.594693742IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-5706747IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-4706746IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AADSQRKLVW GDGHYERAAG APSISGFEAM  60
DLLLKEKAAA LRSGTGRGGG GGEGHAADGA AGHSHDRVDA LVHKAMAQQV HVVGEGVIGQ  120
AALTGLHRWI VHDIVDECEE EDEVLLEMKG QFCAGIQTIA VIPVLPRGVI QLGSTKMVME  180
EAAFIDHVRS LFQQLGSSTA VVPCGSFVQD SIMRTPFHKS LGVPTSSHSE DLAGGGNTYN  240
DDMINHQFRH QKSPASTIQS FNPVQQFYAG PTFCRPVTIA SRCDLFQPDH GSTFTLNSQS  300
EDNRSTALLK NSVSHSKTSN DAFSHAFNPL NEPNVSISGR RECVSIEQHG SCRNGEMEIT  360
IGRTASSSCT GKTNIINKVD DLLSQDCLVG CQASNATSVN RKFQTMSIVD NTKLQDGSYA  420
IPHAALVDST QYSDCFQSLL GTIQGSSSSN SNAIHVDTSH NAVHGKSNFC PLGDRNAANS  480
SDLAELLASP IPLELTGGND LFDVLQLQQK PNGSNNSEVN NRQSMPYGSE QAVKSLIGCV  540
DDDFTGLITE ADPDQLLDAI VSKIITGHKQ NVDTSASCST TVAGFDRPLH SDCHLYTTGP  600
SSGPIFCNFA SVAPVAIKTE GPAAGSRQSS SSIDKSAGCS QTQESYKSQI RLWVENNHSV  660
GSDSLSTGQA SDSLSTGQCK RSDEIGKSNR KRSRPGESAR PRPKDRQMIQ DRIKELREIV  720
PNSAKCSIDT LLEKTIKHML FLQNVAKHAD KLKGSGEPKI VSHEEGLLLK DNFEGGATWA  780
FEVGTRSMTC PIIVEDLNPP RQMLVEMLCK ERGIFLEIAD QIRGLGLTIL KGVMEVRKDK  840
IWARFAVEAN KDVTRMEIFL SLVHLLEPST GSSILSAGVE NTSLPRDSFF PSSIPASGFS  900
NCL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.142870.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329848860.0
Expression AtlasQ5N9E6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g64560.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g64560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680330.0AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619837.10.0transcription factor LHW isoform X4
TrEMBLQ5N9E60.0Q5N9E6_ORYSJ; BHLH transcription factor-like protein
STRINGOS01T0865600-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.16e-55conserved peptide upstream open reading frame 7