PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g64560.1
Common NameLOC4324795, Os01g0865600, OSNPB_010865600, P0505D12.13
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 905aa    MW: 97391.3 Da    PI: 6.3652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g64560.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000277077441355
                       HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       R+ i +++ eLre++P++      K s  + Lek+++++  Lq
  LOC_Os01g64560.1 707 RQMIQDRIKELREIVPNS-----AKCSIDTLLEKTIKHMLFLQ 744
                       77899************6.....5899999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-357193IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.19E-4688745No hitNo description
PROSITE profilePS5088810.594694743IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-4707747IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-5707748IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    Send to blast
MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AADSQRLKLV WGDGHYERAA GAPSISGFEA  60
MDLLLKEKAA ALRSGTGRGG GGGEGHAADG AAGHSHDRVD ALVHKAMAQQ VHVVGEGVIG  120
QAALTGLHRW IVHDIVDECE EEDEVLLEMK GQFCAGIQTI AVIPVLPRGV IQLGSTKMVM  180
EEAAFIDHVR SLFQQLGSST AVVPCGSFVQ DSIMRTPFHK SLGVPTSSHS EDLAGGGNTY  240
NDDMINHQFR HQKSPASTIQ SFNPVQQFYA GPTFCRPVTI ASRCDLFQPD HGSTFTLNSQ  300
SEDNRSTALL KNSVSHSKTS NDAFSHAFNP LNEPNVSISG RRECVSIEQH GSCRNGEMEI  360
TIGRTASSSC TGKTNIINKV DDLLSQDCLV GCQASNATSV NRKFQTMSIV DNTKLQDGSY  420
AIPHAALVDS TQYSDCFQSL LGTIQGSSSS NSNAIHVDTS HNAVHGKSNF CPLGDRNAAN  480
SSDLAELLAS PIPLELTGGN DLFDVLQLQQ KPNGSNNSEV NNRQSMPYGS EQAVKSLIGC  540
VDDDFTGLIT EADPDQLLDA IVSKIITGHK QNVDTSASCS TTVAGFDRPL HSDCHLYTTG  600
PSSGPIFCNF ASVAPVAIKT EGPAAGSRQS SSSIDKSAGC SQTQESYKSQ IRLWVENNHS  660
VGSDSLSTGQ ASDSLSTGQC KRSDEIGKSN RKRSRPGESA RPRPKDRQMI QDRIKELREI  720
VPNSAKCSID TLLEKTIKHM LFLQNVAKHA DKLKGSGEPK IVSHEEGLLL KDNFEGGATW  780
AFEVGTRSMT CPIIVEDLNP PRQMLVEMLC KERGIFLEIA DQIRGLGLTI LKGVMEVRKD  840
KIWARFAVEA NKDVTRMEIF LSLVHLLEPS TGSSILSAGV ENTSLPRDSF FPSSIPASGF  900
SNCL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.142870.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329848860.0
Expression AtlasQ5N9E6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g64560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g64560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680330.0AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619837.10.0transcription factor LHW isoform X4
TrEMBLQ5N9E60.0Q5N9E6_ORYSJ; BHLH transcription factor-like protein
STRINGOS01T0865600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161891314
Representative plantOGRP152168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.16e-55conserved peptide upstream open reading frame 7