PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os01g64310.2

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NAC

Protein Properties

Length: 185aa MW: 20727.4 Da PI: 9.0509

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os01g64310.2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.1	1.1e-42	9	142	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka...eekewyfFskrdkkyatgkrknratksgyWka 85 +pGfrF Pt+eel+++yL++k++g + ++e+vi+ +d+y+v+P +L + + e + w++F++r++++a+g r++r+t sgyWka LOC_Os01g64310.2 9 APGFRFYPTEEELICFYLRNKLDGLRDDIERVIPVFDVYSVDPLQLSEihhemlG--GggeEGEPWFYFCPRQEREARGGRPSRTTPSGYWKA 99 59*************************99***********854555431..14335669************************ PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+s++++ +g+kkt+vfy+grap+g+kt W m+eyr+ LOC_Os01g64310.2 100 AGTPGVVYSADRRPIGMKKTMVFYRGRAPSGTKTAWKMNEYRA 142 ***************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.662	8	176	IPR003441	NAC domain
SuperFamily	SSF101941	1.11E-45	9	147	IPR003441	NAC domain
Pfam	PF02365	3.5E-24	10	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MADGGGRRAP GFRFYPTEEE LICFYLRNKL DGLRDDIERV IPVFDVYSVD PLQLSEIHHE 60 MLGGGGEEGE PWFYFCPRQE REARGGRPSR TTPSGYWKAA GTPGVVYSAD RRPIGMKKTM 120 VFYRGRAPSG TKTAWKMNEY RAFHYPDASS ASASSAGAAA PPNHLPPQVV PFYWRRVNIQ 180 TCIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-28	10	144	19	144	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-28	10	144	19	144	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-28	10	144	19	144	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-28	10	144	19	144	NO APICAL MERISTEM PROTEIN
3swm_A	3e-28	10	144	22	147	NAC domain-containing protein 19
3swm_B	3e-28	10	144	22	147	NAC domain-containing protein 19
3swm_C	3e-28	10	144	22	147	NAC domain-containing protein 19
3swm_D	3e-28	10	144	22	147	NAC domain-containing protein 19
3swp_A	3e-28	10	144	22	147	NAC domain-containing protein 19
3swp_B	3e-28	10	144	22	147	NAC domain-containing protein 19
3swp_C	3e-28	10	144	22	147	NAC domain-containing protein 19
3swp_D	3e-28	10	144	22	147	NAC domain-containing protein 19
4dul_A	3e-28	10	144	19	144	NAC domain-containing protein 19
4dul_B	3e-28	10	144	19	144	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os01g64310.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os01g64310

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071274	0.0	AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632691.1	1e-121	NAC domain-containing protein 90 isoform X2
Swissprot	Q9FMR3	3e-53	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0D3EWL8	1e-120	A0A0D3EWL8_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0FW20	1e-120	A0A0E0FW20_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0N5E4	1e-120	A0A0E0N5E4_ORYRU; Uncharacterized protein
TrEMBL	A2WX86	1e-120	A2WX86_ORYSI; Uncharacterized protein
TrEMBL	I1NTL2	1e-120	I1NTL2_ORYGL; Uncharacterized protein
TrEMBL	Q94CW0	1e-120	Q94CW0_ORYSJ; NAC transcription factor-like protein
STRING	ORUFI01G41540.1	1e-121	(Oryza rufipogon)
STRING	OS01T0862800-01	1e-121	(Oryza sativa)
STRING	ONIVA01G42870.2	1e-121	(Oryza nivara)
STRING	ORGLA01G0320200.1	1e-121	(Oryza glaberrima)
STRING	OBART01G38190.1	1e-121	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-53	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	LOC_Os01g64310.2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]