PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g64020.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 377aa    MW: 41848.2 Da    PI: 6.7
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g64020.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1346.2e-11131161434
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                        k err+++NReAAr+sR+RKka++++Le+ 
  LOC_Os01g64020.2 131 AKTERRLAQNREAARKSRLRKKAYVQNLETS 161
                       799*************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-6128204IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.278130174IPR004827Basic-leucine zipper domain
PfamPF001705.6E-8131162IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.82E-7132175No hitNo description
Gene3DG3DSA:1.20.5.1709.5E-8132176No hitNo description
CDDcd147083.83E-21132184No hitNo description
PROSITE patternPS000360135150IPR004827Basic-leucine zipper domain
PfamPF141449.1E-30213287IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MIQSTLISCL PTAHCCLSLP QLMAEQGNSQ SVGSTTDSSS AQNTMPQMEL VSPASIRASS  60
EHQHQQQQPG QEVMMVTTDD YSYKPGLAAA SPSFQQQHQL QHHQQQQLHG GGDHDKRKHG  120
STRKDGKSVD AKTERRLAQN REAARKSRLR KKAYVQNLET SRVRLQQIEQ ELQRARSQGL  180
FLGGCRAAGD MSSGAAMFDM EYARWLDDDS KRLTDLRGGL QAHLLDTNLG LIVEECMQHY  240
DELFQLKAAL ARSDVFHLLT GTWATPAERC FLWMGGFRPS DLLKILIQQL DPLTEQQMLG  300
IYSLQQSSEQ AEEALAQGLQ QLHQSLADTV AAGTLNDGPG VPNYMSLMAI ALDKLASLES  360
FYQQVRQQLS IVIPFR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.423880.0callus| flower| leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329865470.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993, ECO:0000269|PubMed:22353606}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g64020.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g64020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013380.0AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616943.10.0transcription factor LG2 isoform X2
SwissprotQ5N7C70.0LG2_ORYSJ; Transcription factor LG2
TrEMBLA0A0D3EWJ20.0A0A0D3EWJ2_9ORYZ; Uncharacterized protein
STRINGOMERI01G34450.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.23e-95bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]