PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g64020.1
Common NameLOC4325063, Os01g0859500, OsJ_04144, OSNPB_010859500, P0489B03.13, P0679C12.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 540aa    MW: 59538.7 Da    PI: 6.967
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g64020.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.49.9e-11228258434
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                        k err+++NReAAr+sR+RKka++++Le+ 
  LOC_Os01g64020.1 228 AKTERRLAQNREAARKSRLRKKAYVQNLETS 258
                       799*************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-6225301IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.278227271IPR004827Basic-leucine zipper domain
PfamPF001709.0E-8228259IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-7229272No hitNo description
CDDcd147082.22E-20229281No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-7229273No hitNo description
PROSITE patternPS000360232247IPR004827Basic-leucine zipper domain
PfamPF141441.6E-29310384IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MVQGEESSWR MAASTHHERA IPLNQALAYG VQAHASPSVA AAPPASFLDF QPAAAAAAYF  60
GELEEALIHG ANAGGVVDPG MIRADVHSKS AAAAATAGYL AARPPTLEIF PSWPMRQQQQ  120
LHSGNSQSVG STTDSSSAQN TMPQMELVSP ASIRASSEHQ HQQQQPGQEV MMVTTDDYSY  180
KPGLAAASPS FQQQHQLQHH QQQQLHGGGD HDKRKHGSTR KDGKSVDAKT ERRLAQNREA  240
ARKSRLRKKA YVQNLETSRV RLQQIEQELQ RARSQGLFLG GCRAAGDMSS GAAMFDMEYA  300
RWLDDDSKRL TDLRGGLQAH LLDTNLGLIV EECMQHYDEL FQLKAALARS DVFHLLTGTW  360
ATPAERCFLW MGGFRPSDLL KILIQQLDPL TEQQMLGIYS LQQSSEQAEE ALAQGLQQLH  420
QSLADTVAAG TLNDGPGVPN YMSLMAIALD KLASLESFYQ QADNLRQQTL HQLRRILTTR  480
QAARCFLSIG EYYRRLRALS NLWSSRPREN FIGTESVSPT GTELQPMHNQ PQQNQYSGF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.423880.0callus| flower| leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329865470.0
Expression AtlasQ5N7C7-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993, ECO:0000269|PubMed:22353606}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g64020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g64020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013380.0AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616943.10.0transcription factor LG2 isoform X2
SwissprotQ5N7C70.0LG2_ORYSJ; Transcription factor LG2
TrEMBLA0A0E0N5A90.0A0A0E0N5A9_ORYRU; Uncharacterized protein
STRINGOS01T0859500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Representative plantOGRP1069649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-131bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]