PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g64000.2 | ||||||||
Common Name | ABI5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 379aa MW: 40308.5 Da PI: 5.0518 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.1 | 1.1e-14 | 304 | 360 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +r+rr++kNRe+A rsR+RK+a++ eLe + L++eN +Lk e+e +k++++ k + LOC_Os01g64000.2 304 RRQRRMIKNRESAARSRARKQAYTVELEAELNYLKQENARLK-EAELVEKMMEQSKEK 360 79****************************************.**********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.1E-14 | 300 | 363 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.657 | 302 | 346 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.7E-11 | 304 | 360 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 6.53E-24 | 304 | 345 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-12 | 304 | 361 | No hit | No description |
SuperFamily | SSF57959 | 3.81E-10 | 304 | 346 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 307 | 322 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MASEMSKNVK VTDDQEVTSQ ERDQSGGTKV GGEEEIAPLA RQSSILSLTL EELQNSLCEP 60 GRNFGSMNMD EFVANIWNAE EFQATTGGCK GAMEEAKVVD SGSGSGDAGG SGLCRQGSFS 120 LPLPLCQKTV EEVWTEINQA PAHTSAPASA LQPHAGSGGV AANDRQVTLG EMTLEDFLVK 180 AGVVRGSFTG QAAMGSGMVN GPVNPMQQGQ GGPMMFPVGP VNAMYPVMGD GMGYPGGYNG 240 MAIVPPPPPA QGAMVVVSPG SSDGMSAMTH ADMMNCIGNG MMIENGTRKR PHREDGCAEK 300 TVERRQRRMI KNRESAARSR ARKQAYTVEL EAELNYLKQE NARLKEAELV EKMMEQSKEK 360 MNANRGGSQL RRSGSCMW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10541 | 0.0 | callus| flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A2TGS0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves and panicles (PubMed:17604002). Expressed in seeds (PubMed:21055780). {ECO:0000269|PubMed:17604002, ECO:0000269|PubMed:21055780}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that possesses transactivation activity in yeast (PubMed:17604002, PubMed:21055780, PubMed:18236009). Involved in abscisic acid (ABA) signaling pathway. Binds to the G-box motif 5'-CACGTG-3' of TRAB1 gene promoter (PubMed:17604002). Involved in the regulation of pollen maturation. May act as negative regulator of salt stress response (PubMed:18236009). Together with PYL5, PP2C30 and SAPK2, is part of an ABA signaling unit that modulates seed germination and early seedling growth (PubMed:22071266). {ECO:0000269|PubMed:17604002, ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00294 | DAP | Transfer from AT2G36270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g64000.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) (PubMed:21055780, PubMed:18236009, PubMed:22071266). Induced by salt stress. Down-regulated by cold and drought stresses (PubMed:18236009). {ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g64000 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF199630 | 0.0 | EF199630.1 Oryza sativa (japonica cultivar-group) bZIP-type transcription factor ABI5 isoform 1 (ABI5) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628684.1 | 0.0 | bZIP transcription factor ABI5 homolog | ||||
Swissprot | Q8RZ35 | 0.0 | ABI5_ORYSJ; bZIP transcription factor ABI5 homolog | ||||
TrEMBL | A0A0D3EWI8 | 0.0 | A0A0D3EWI8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0N5A0 | 0.0 | A0A0E0N5A0_ORYRU; Uncharacterized protein | ||||
STRING | OMERI01G34430.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44460.1 | 2e-43 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g64000.2 |
Publications ? help Back to Top | |||
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