PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g64000.1
Common NameABI5, LOC4325061, OREB1, P0489B03.11, P0679C12.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 389aa    MW: 41480 Da    PI: 5.548
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g64000.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.52.6e-12304348549
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                       +r+rr++kNRe+A rsR+RK+a++ eLe +   L++eN +Lk+  
  LOC_Os01g64000.1 304 RRQRRMIKNRESAARSRARKQAYTVELEAELNYLKQENARLKEAE 348
                       79************************************9999543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.2E-13300365IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.657302346IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.8E-13304347No hitNo description
CDDcd147071.03E-23304345No hitNo description
PfamPF001708.0E-11304350IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.5E-10304348No hitNo description
PROSITE patternPS000360307322IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010152Biological Processpollen maturation
GO:0010187Biological Processnegative regulation of seed germination
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MASEMSKNVK VTDDQEVTSQ ERDQSGGTKV GGEEEIAPLA RQSSILSLTL EELQNSLCEP  60
GRNFGSMNMD EFVANIWNAE EFQATTGGCK GAMEEAKVVD SGSGSGDAGG SGLCRQGSFS  120
LPLPLCQKTV EEVWTEINQA PAHTSAPASA LQPHAGSGGV AANDRQVTLG EMTLEDFLVK  180
AGVVRGSFTG QAAMGSGMVN GPVNPMQQGQ GGPMMFPVGP VNAMYPVMGD GMGYPGGYNG  240
MAIVPPPPPA QGAMVVVSPG SSDGMSAMTH ADMMNCIGNG MMIENGTRKR PHREDGCAEK  300
TVERRQRRMI KNRESAARSR ARKQAYTVEL EAELNYLKQE NARLKEAEKT VLLTKKQMLV  360
EKMMEQSKEK MNANRGGSQL RRSGSCMW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.105410.0callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8RZ35
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves and panicles (PubMed:17604002). Expressed in seeds (PubMed:21055780). {ECO:0000269|PubMed:17604002, ECO:0000269|PubMed:21055780}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that possesses transactivation activity in yeast (PubMed:17604002, PubMed:21055780, PubMed:18236009). Involved in abscisic acid (ABA) signaling pathway. Binds to the G-box motif 5'-CACGTG-3' of TRAB1 gene promoter (PubMed:17604002). Involved in the regulation of pollen maturation. May act as negative regulator of salt stress response (PubMed:18236009). Together with PYL5, PP2C30 and SAPK2, is part of an ABA signaling unit that modulates seed germination and early seedling growth (PubMed:22071266). {ECO:0000269|PubMed:17604002, ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00294DAPTransfer from AT2G36270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g64000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) (PubMed:21055780, PubMed:18236009, PubMed:22071266). Induced by salt stress. Down-regulated by cold and drought stresses (PubMed:18236009). {ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g64000
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1996310.0EF199631.1 Oryza sativa (japonica cultivar-group) bZIP-type transcription factor ABI5 isoform 2 (ABI5) mRNA, complete cds, alternatively spliced.
GenBankJQ0018180.0JQ001818.1 Oryza sativa Japonica Group ABRE-binding bZIP transcription factor (OREB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628684.10.0bZIP transcription factor ABI5 homolog
SwissprotQ8RZ350.0ABI5_ORYSJ; bZIP transcription factor ABI5 homolog
TrEMBLA0A0E0N5990.0A0A0E0N599_ORYRU; Uncharacterized protein
STRINGORUFI01G41310.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38303558
Representative plantOGRP5401580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44460.19e-45bZIP family protein
Publications ? help Back to Top
  1. Zou M,Guan Y,Ren H,Zhang F,Chen F
    Characterization of alternative splicing products of bZIP transcription factors OsABI5.
    Biochem. Biophys. Res. Commun., 2007. 360(2): p. 307-13
    [PMID:17604002]
  2. Zou M,Guan Y,Ren H,Zhang F,Chen F
    A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance.
    Plant Mol. Biol., 2008. 66(6): p. 675-83
    [PMID:18236009]
  3. Hong JY, et al.
    Phosphorylation-mediated regulation of a rice ABA responsive element binding factor.
    Phytochemistry, 2011. 72(1): p. 27-36
    [PMID:21055780]
  4. Kim H, et al.
    A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth.
    J. Exp. Bot., 2012. 63(2): p. 1013-24
    [PMID:22071266]
  5. Bhatnagar N, et al.
    The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.
    Plant Mol. Biol., 2017. 93(4-5): p. 389-401
    [PMID:28000033]