PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g63980.1 | ||||||||
Common Name | LOC4325059, Os01g0859100, OSNPB_010859100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 377aa MW: 41327.5 Da PI: 6.5031 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 9.8e-06 | 216 | 235 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ LOC_Os01g63980.1 216 FICHVCNKTFNRYNNMQMHM 235 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.55E-5 | 212 | 239 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-5 | 216 | 235 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.201 | 216 | 243 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 218 | 238 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.75E-5 | 284 | 320 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MRMGLRTCSA MEGEVVAASP FFEWLKPPPR PASSSSWSSS FSSSSSMASR DQETVVPGED 60 GGGEIQEDHK SGMTCLPLLS MLEEGNSKRH EHPVKEEIMS SAHAAGVVEP GVELNIGLPV 120 TGSSAQEVTM EEDDEEEDDD DVGEEEMDEW KPMHGGCKVE GDEEQYGEAV ASVEGSSSIT 180 AVGDMFGGVG AESGVAMSSR YWIPTPAQIL VGPVQFICHV CNKTFNRYNN MQMHMWGHGR 240 EYRKGPESLK GTQTLAMLKL PCYCCAAGCK NNVAHPRARP LKDFRTLQTH YKRKHGAKPF 300 RCRRCAKPFA VKGDWRTHEK NCGKRWFCAC GSDFKHKRSL NDHVRSFGAH HLPVAESAAA 360 AATTPADKDR IISFQR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.36152 | 0.0 | callus| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32974352 | 0.0 | ||||
Expression Atlas | Q0JHK0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g63980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g63980 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064334 | 0.0 | AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625834.1 | 0.0 | protein TRANSPARENT TESTA 1 | ||||
TrEMBL | Q0JHK0 | 0.0 | Q0JHK0_ORYSJ; Os01g0859100 protein | ||||
STRING | OS01T0859100-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4472 | 36 | 67 | Representative plant | OGRP410 | 15 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20880.1 | 2e-92 | WIP domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g63980.1 |
Entrez Gene | 4325059 |