PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g63680.1 | ||||||||
Common Name | LOC4324828, Os01g0855400, OSNPB_010855400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 449aa MW: 48075.2 Da PI: 8.0392 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.2e-17 | 116 | 162 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ede l++ v ++G + W+tIa+ ++ gR +kqc++rw ++l LOC_Os01g63680.1 116 KGAWTRQEDEVLKQMVILHGDRKWATIAKSLP-GRIGKQCRERWTNHL 162 79******************************.************996 PP | |||||||
2 | Myb_DNA-binding | 55.1 | 1.8e-17 | 168 | 210 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+e+d l++a+k +G++ W+ Iar+++ gR+++ +k++w+ LOC_Os01g63680.1 168 KDVWTEEDDRMLIEAHKTYGNR-WSVIARCLP-GRSENAVKNHWN 210 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.482 | 111 | 166 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-29 | 113 | 209 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-16 | 115 | 164 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 116 | 162 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 117 | 169 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.52E-14 | 118 | 162 | No hit | No description |
SMART | SM00717 | 4.8E-18 | 167 | 215 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.376 | 167 | 217 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.0E-15 | 168 | 210 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-21 | 170 | 214 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.85E-15 | 171 | 213 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009072 | anatomy | plant ovary | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MLPTSKNKLM AAAGNSFLNQ DPTMMGSGMP HMYFASSSHG TGAHYQSPGG APITMAVPDM 60 GFLVAGIGIA PSSFVMPEGA LAASYSAMAT VPVGVVVPQQ QSSRFGGNNG NPGSFKGAWT 120 RQEDEVLKQM VILHGDRKWA TIAKSLPGRI GKQCRERWTN HLRPDIKKDV WTEEDDRMLI 180 EAHKTYGNRW SVIARCLPGR SENAVKNHWN ATKRSLKSKR RMKKKSVQVV NSPPGQLSPL 240 EEYIRSQYPS AVETTPPPPA VPAPPSDVIV HGAGSVSAGP TVATQEPTGT NPSEMGIYLG 300 LGNPAGPTTQ QLAAMNLNMS LAPDLNAYND QREGYYLPFV PQGNLHYGMH VPAPPVQQQQ 360 QQGISVDQGL HSSCLSLYHP FPGTHPVSLD FGCQSSNHAN AGGYYSEAGP SSGSGSGDPD 420 DVDVIQMASR QFLMPSEAEV TLDLTRFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-42 | 110 | 218 | 1 | 110 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5715 | 0.0 | panicle | ||||
Os.9144 | 0.0 | callus| flower| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156764610 | 0.0 | ||||
GEO | 284431791 | 0.0 | ||||
Expression Atlas | A0A0P0VAQ0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g63680.1 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g63680 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287995 | 0.0 | AK287995.1 Oryza sativa Japonica Group cDNA, clone: J075101C16, full insert sequence. | |||
GenBank | FJ940215 | 0.0 | FJ940215.1 Oryza sativa Japonica Group clone KCS005D12 Myb protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645142.1 | 0.0 | transcription factor MYB73 | ||||
TrEMBL | A0A0P0VAQ0 | 0.0 | A0A0P0VAQ0_ORYSJ; Os01g0855400 protein | ||||
STRING | OS01T0855400-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 4e-44 | myb domain protein 118 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g63680.1 |
Entrez Gene | 4324828 |