PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g63460.1
Common NameLOC4324820, Os01g0853700, OsJ_04107, OSNPB_010853700, P0529E05.26
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 300aa    MW: 33056.3 Da    PI: 7.3015
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g63460.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.8e-083177347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      +W++eE + + +a +q   +   +W+ +a++++ ++t  ++ ++++++
  LOC_Os01g63460.1 31 AWSAEENKVFERALAQVDLDspnRWEMVAAMLP-RKTVIDVMNHYRDL 77
                      7****************99999***********.***********986 PP
2Myb_DNA-binding44.34e-14138182347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE++ ++ + k++G g+W+ I+r++ + Rt+ q+ s+ qky
  LOC_Os01g63460.1 138 PWTEEEHKSFLMGLKKYGRGDWRNISRYFVTSRTPTQVASHAQKY 182
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-52177IPR009057Homeodomain-like
PROSITE profilePS500906.5512478IPR017877Myb-like domain
SMARTSM007174.1E-72880IPR001005SANT/Myb domain
CDDcd001676.80E-73177No hitNo description
SuperFamilySSF466891.24E-103185IPR009057Homeodomain-like
PROSITE profilePS5129416.496131187IPR017930Myb domain
SuperFamilySSF466899.66E-18133187IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-17134185IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-11135181IPR009057Homeodomain-like
SMARTSM007177.6E-12135185IPR001005SANT/Myb domain
PfamPF002491.6E-11138182IPR001005SANT/Myb domain
CDDcd001671.42E-10138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MMAEALREVL PLPYFPGQPC WYLQERRGAE AWSAEENKVF ERALAQVDLD SPNRWEMVAA  60
MLPRKTVIDV MNHYRDLEND VGSIEAGLVP FPHYSSSLSP ASSGFTLQDW DGSDGGFRRG  120
CYLKRGRAPD QERKKGVPWT EEEHKSFLMG LKKYGRGDWR NISRYFVTSR TPTQVASHAQ  180
KYFIRLNSGG KDKRRSSIHD ITTVNLPEED TSNPSPSPPS VLTTASDQLG SLVDTKPVPP  240
PPSLGAQRHF MSPLPGALGV SHHPYGNVKL EPNASFLAGG GTGPGLDDAI LLQMQCGHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-142697576RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.424060.0panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379886510.0
Expression AtlasQ5N9B7-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g63460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g63460
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402140.0FJ940214.1 Oryza sativa Japonica Group clone KCS611H03 Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621447.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-77DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLQ5N9B70.0Q5N9B7_ORYSJ; Myb transcription factor
STRINGOS01T0853700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-79MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]