PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g63380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 629aa MW: 72032.1 Da PI: 6.9665 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.2 | 8.9e-26 | 51 | 137 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFs+rk + ks ++ i +++fvCs+eg++++++++ +r+ra tr+gC a++++k + +gk+ ++++++ HnHel LOC_Os01g63380.1 51 EFYNRYAGDVGFSIRKFWHDKS-STNVIRTKKFVCSREGFNKRNTSD--ACQRKRADTRVGCMAEMTIKITPTGKYAIASFSNTHNHELI 137 6********************9.5555****************9988..9999***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-22 | 51 | 137 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.1E-36 | 259 | 353 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.361 | 457 | 493 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.5E-7 | 465 | 491 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.4E-8 | 468 | 495 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 629 aa Download sequence Send to blast |
MAEAPVHPSS SKNHEKEDVG DTNISSTDDA CVQKLEPVIG MEFDDEDIAY EFYNRYAGDV 60 GFSIRKFWHD KSSTNVIRTK KFVCSREGFN KRNTSDACQR KRADTRVGCM AEMTIKITPT 120 GKYAIASFSN THNHELITPS KAHLLRSQRR MTEAQKAQID ILNDSGVRSK EGHEVMSRQA 180 GGRQSLTFTR KDYKNYLRSK RMKSIQEGDT GAILQYLQDK QMENPSFFYA IQVDEDEMMT 240 NIFWADARSV LDFDYFGDVI CFDTTYRTNN YGRPFALFVG VNHHKQTVVF GAALLYDETT 300 STFEWLFETF KRAMSGKEPR TILTDQCAAI INAIGTVFPN STHRLCVWHM YQNAAVHLSH 360 IFQGSKTFKN DFGKCVFDFE EVDEFISAWN KMIEEYNLND NQWLHHLFEI KEKWALVYGR 420 QTFCADMKST QRSESLNALL KRYLHVIDSA KHGEHGFLVK FDPNEIKVSC SCKKFEFVGI 480 LCRHALKVLD HNNIKELPSE YILKRWTKYA KIGSSQANRK CANDEDARVV LARRYGSLCR 540 SYNNILSKAA ENEEAYALLE RTSLELMEQV DQIMQANKSE GKSKVDRNAG GTSTTSEVIP 600 NFTVSNENDQ MPSEVPNDPS ENLQDKHF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.95865 | 1e-53 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g63380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g63380 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003279 | 0.0 | AP003279.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0529E05. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880978.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0P0VAD9 | 0.0 | A0A0P0VAD9_ORYSJ; Os01g0852650 protein | ||||
STRING | OS01T0852650-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-113 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g63380.1 |