PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g63030.1
Common NameP0414E03.8
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 884aa    MW: 101131 Da    PI: 8.6784
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g63030.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.42e-17136216190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fYn YA + GF +r +k + + ++++ t+r+ +Cs +g++ ++kk          + r+gC a++k++++   + w vtk+++ HnH++ 
  LOC_Os01g63030.1 136 NFYNVYAVSKGFGIRLDKDHMN-TKKQRTMRQICCSHQGRNPKTKKP---------SVRIGCPAMMKINMSGaGSGWSVTKVVSAHNHPMK 216
                       6****************99998.5555899*********99887655.........9**************99999************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-13136216IPR004330FAR1 DNA binding domain
PfamPF105518.8E-32338431IPR018289MULE transposase domain
PfamPF044341.3E-5620653IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.299620656IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-7631658IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MDKQVKNHRP SDGTDGSREI LMDERNPTMD IVDGISQSVH DSQPDGGQSS RVAMEEDVPS  60
RVGSHDSGHG IPETRNLVPS LDWTEGNPYE KEGARIPMER MVVDNVDSSA VIPPADPQIL  120
TPMLGQRFKT ERDAYNFYNV YAVSKGFGIR LDKDHMNTKK QRTMRQICCS HQGRNPKTKK  180
PSVRIGCPAM MKINMSGAGS GWSVTKVVSA HNHPMKKSVG VTKNYQSHNQ IDEGTRGIIE  240
EMVDSSMSLT NMYGMLSGMH GGPSMVPFTR KAMDRVAYAI RRDESSDDMQ KTLDVLKDLQ  300
KRSKNFFYSI QVDEACRVKN IFWSHAVSRL NFEHFGDVIT FDTTYKTNKY NMPFAPFVGV  360
NNHFQSTFFG CALLREETEE SFTWLFNTFK ECMNGKVPIG ILTDNCPSMA AAIRTVFPNT  420
IHRVCKSHVL KKAKEFMGNI YSKCHTFKKA FHKVLTQTLT EEEFVAAWHK LIRDYNLEKS  480
VYLRHIWDIR RKWAFVYFSH RFFAGMTTTQ RSESANHVFK MFVSPSSSMN GFVKRYDRFF  540
NEKLQKEDSE EFQTSNDKVE IKTRSPIEIH ASQVYTRAVF QLFSEELTDS ISYMVKPGED  600
ESTVQVVRMN SQESFLRKEY QVSCDLEREE FSCVCKMFEH KGILCSHILR VLVQYGLSRI  660
PERYILKRWT KDARDTIPPH LHGYKDDVDA SQSRSYIHVM LKRKTVEVAK IANKDVQTFK  720
MAMTVMNKLL EDMKNQLSLD DGDNSREAPK RAARHKSRST VLTKDGNEDV GGGDEDSEYD  780
VPSEDEGGNL TADILPPLKK RSRGRPKVNR YKSGGEVASL KRRKEVGIEK KNTTNECESV  840
EEENQVIDHD DEVPFPRRFC HTCHEAGHNS RTCGRTSTYK RKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.911210.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976025290.0
Expression AtlasQ5N9T7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g63030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g63030
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032420.0AP003242.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0414E03.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880431.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ5N9T70.0Q5N9T7_ORYSJ; Putative far-red impaired response protein
STRINGOS04T0354200-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-114FAR1-related sequence 5