PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g62514.1 | ||||||||
Common Name | Os01g0842801, OSNPB_010842801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 196aa MW: 21158.8 Da PI: 9.4863 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 35 | 2.8e-11 | 165 | 185 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 Dgy+WrKYGqK++k++++pr LOC_Os01g62514.1 165 ADGYKWRKYGQKSIKNNPHPR 185 6*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-10 | 161 | 186 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.37E-9 | 162 | 186 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-5 | 164 | 195 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.508 | 166 | 195 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-8 | 166 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MYGQSPHKQR RRFPGPYLMG DVLRAQATAS AEEVAGGVWP CELDDHLIGE LLGDDGLFVP 60 AAEHPTLYYS FGAGSSAAAA AAPCNGGGSA DHERRPRPAP AVSRDLCSVY SGPTIRDIEK 120 ALSSSASPRP PYPSGRRYSS LYFRRVEAES KYTSKVRSCG GKMPADGYKW RKYGQKSIKN 180 NPHPRCATRS IIDPI* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A0A0P0VA49 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g62514.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g62514 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT835509 | 0.0 | CT835509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA014N20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635485.1 | 1e-131 | WRKY transcription factor WRKY28 | ||||
TrEMBL | A0A0P0VA49 | 1e-140 | A0A0P0VA49_ORYSJ; Os01g0842801 protein | ||||
STRING | OS01T0842801-00 | 1e-141 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 1e-10 | WRKY DNA-binding protein 49 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g62514.1 |