PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g62510.1 | ||||||||
Common Name | OsJ_04042, P0406G08.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 204aa MW: 21483.5 Da PI: 5.042 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 54.3 | 2.7e-17 | 17 | 54 | 21 | 58 |
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 sYY+Cts++C++kk+ve+s++dp+++++tYeg+H+h LOC_Os01g62510.1 17 LWSYYKCTSSRCSAKKHVEKSTDDPEMLIVTYEGSHHH 54 569**********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 2.6E-9 | 3 | 56 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.6E-15 | 15 | 55 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-12 | 15 | 54 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-13 | 18 | 56 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.709 | 19 | 57 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEEDDGLALM TGANQSLWSY YKCTSSRCSA KKHVEKSTDD PEMLIVTYEG SHHHGPQPLF 60 PPHIAQPPPP TSVVGFSAAS GAGPPPSSPA AAARKRKNYV RAAFSPTTSE DDGDGAGRLR 120 PEWPQDDGTS CDVAELRRRG DAEHAAPRRV ATDRSCDDGG GGGSTSASSS VARADAATAL 180 SSDSPPTIWS CLDWPWSQET LFL* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q8S2A6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g62510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g62510 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003240 | 0.0 | AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635485.1 | 1e-129 | WRKY transcription factor WRKY28 | ||||
TrEMBL | Q8S2A6 | 1e-145 | Q8S2A6_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI01G40220.1 | 1e-144 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.1 | 6e-13 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g62510.1 |