PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g62460.1 | ||||||||
Common Name | LOC4327499, Os01g0842200, OSNPB_010842200, P0406G08.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 821aa MW: 90671.1 Da PI: 5.9598 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 386.9 | 2.2e-118 | 444 | 813 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++lL++cA+ v+++d + a++lL++++++a +gd qRla++f+++L+arla+++s++yk + ++ + +++l+a++l+ ++P+ k+s LOC_Os01g62460.1 444 ETLLIHCAQSVATDDRRSATELLKQIRQHAHANGDGDQRLAHCFANGLEARLAGTGSQIYKNYTITRLP---CTDVLKAYQLYLAACPFKKIS 533 789************************************************************999999...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 h aNq+Il+ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+ L+++A++++vpfef++ +a+r LOC_Os01g62460.1 534 HYFANQTILNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSNRPGGPPKLRITGIDTPQPGfrPAERTEETGRYLSDYAQTFNVPFEFQA-IASR 625 ****************************************************************************************.7*** PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 +e++++e+L+++++E+l+Vn++++ ++l+desv es+r+ Lk++++++P+v+++ + ++n++ F++rf eal +ysa+fd+le+++p++ LOC_Os01g62460.1 626 FEAVRMEDLHIEEDEVLIVNCMFKFKNLMDESVVAESPRNMALKTIRKMNPHVFIHGVVNGSYNAPFFVTRFREALFHYSAIFDMLETNIPKD 718 ********************************************************************************************* PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 +e+r +E +l++re+ nv++ceg er er et+++W+ r +++GFk++pl+++++k a+ +r +++d + ++e++ +l++gWk+r L+++S LOC_Os01g62460.1 719 NEQRLLIESALFSREAINVISCEGLERMERPETYKQWQVRNQRVGFKQLPLNQDMMKRAREKVRCYHKD-FIIDEDNRWLLQGWKGRILFALS 810 *******************************************************************77.*********************** PP GRAS 372 aWr 374 W+ LOC_Os01g62460.1 811 TWK 813 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.115 | 417 | 794 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.7E-116 | 444 | 813 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 821 aa Download sequence Send to blast |
MVMDAGVHDV CTMLPGSKRD AHLPLPIYPQ IAAANGFATA EEFDPLLFLS PDAVCGGGGG 60 DYLNIVSAQP ISAASTNGAS PPRDVSVSAS AASSAAAQHD DSEAFSDIVL GYINRMLMAE 120 DIDEKFEHYP VNADDLLAAE KPFLEILADQ SPYSGGSSVE SPDGSSAANS CNSLSPCNCS 180 SSSDGLGAVP QTPVLEFPTA AFSQTPQLYG DLIPTGGMVE SGGAWPYDPT EFYQLQTKPV 240 RENLPSQSSS FASSNGSSVT FSEGFESLLS PAGVLPDVSL NDFVVQNQQA LQFRRGFQEA 300 SKFLPDESKL VIDVDKLYSG DEGSRFLGEV RQEKKLVKVK TETSDVESAG HRGKKHFYGD 360 DLDAEEGRCS KHSAQGIDTD HLVRDLMDKV LLCNGETCSK GVKELREALQ HDVAKHSGGG 420 HGKGSSHGKG RGKKQPKKEV VDLETLLIHC AQSVATDDRR SATELLKQIR QHAHANGDGD 480 QRLAHCFANG LEARLAGTGS QIYKNYTITR LPCTDVLKAY QLYLAACPFK KISHYFANQT 540 ILNAVEKAKK VHIVDYGIYY GFQWPCLIQR LSNRPGGPPK LRITGIDTPQ PGFRPAERTE 600 ETGRYLSDYA QTFNVPFEFQ AIASRFEAVR MEDLHIEEDE VLIVNCMFKF KNLMDESVVA 660 ESPRNMALKT IRKMNPHVFI HGVVNGSYNA PFFVTRFREA LFHYSAIFDM LETNIPKDNE 720 QRLLIESALF SREAINVISC EGLERMERPE TYKQWQVRNQ RVGFKQLPLN QDMMKRAREK 780 VRCYHKDFII DEDNRWLLQG WKGRILFALS TWKPDNRSSS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-51 | 447 | 813 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.11866 | 0.0 | callus| flower| leaf| panicle| root| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115440982 | 0.0 | ||||
Expression Atlas | Q5N9X3 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g62460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g62460 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003240 | 0.0 | AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619294.1 | 0.0 | scarecrow-like protein 9 isoform X1 | ||||
TrEMBL | A0A0E0N4T1 | 0.0 | A0A0E0N4T1_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q5N9X3 | 0.0 | Q5N9X3_ORYSJ; Os01g0842200 protein | ||||
STRING | ORUFI01G40180.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0842200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12518 | 31 | 37 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-176 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g62460.1 |
Entrez Gene | 4327499 |