PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g62410.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 500aa MW: 55086.1 Da PI: 7.9941 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.3 | 9.5e-20 | 31 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++d+vk++G+ W+ Ia+ ++ gR +kqc++rw+++l LOC_Os01g62410.2 31 KGPWTQEEDDQIIDLVKKYGPTKWSVIAKALP-GRIGKQCRERWHNHL 77 79******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 60.6 | 3.3e-19 | 83 | 126 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WTteE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++ LOC_Os01g62410.2 83 KDAWTTEEEQALINAHRIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 126 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.24 | 1 | 25 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-13 | 6 | 41 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 31.757 | 26 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.97E-32 | 28 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-19 | 30 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-18 | 31 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.02E-17 | 33 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-27 | 42 | 84 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-18 | 82 | 130 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.863 | 82 | 132 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.0E-17 | 83 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-23 | 85 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-14 | 85 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MYLYAAECFP YRTEVQCLHR WQKVLNPELI KGPWTQEEDD QIIDLVKKYG PTKWSVIAKA 60 LPGRIGKQCR ERWHNHLNPE IRKDAWTTEE EQALINAHRI YGNKWAEIAK VLPGRTDNSI 120 KNHWNSSLRK KQDMYNTSNN MVVPKLLVHD KFKDKPKLMA MEGHLDLNKA PIINSKDQPG 180 TAHRSNCSGF LSRSSLPTAQ PLTSREASVV DGSAVTLVAQ ALESDSVRGK GLEIDSVHEK 240 GLEVNSAPDH TGNSWTIQLE AAPSKGEAEL SLKNEARSLG PLCYQIPNME DVVPVSSSLF 300 SDHLTGNHTS EHCGDDILSP AGCTTPPPTK GKLTSQLSVD SILKSAANSF PGTPSILKRR 360 KRDKSTPVSA SEMKISGSNT DRFYTPMGME PATATPESFK TTSFLSLGSL DGSVKSFDVS 420 PQYRARSKRM ALTKTVEKQL DFSSDGLDTC GSEILNSSCN NSQSTLSITE APKLKEKEHA 480 VQLENLTKNF AHTTNLDVT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-64 | 6 | 131 | 33 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-64 | 6 | 131 | 33 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 358 | 363 | RRKRDK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.38177 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32976538 | 0.0 | ||||
Expression Atlas | D6BV30 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and spikes. {ECO:0000269|PubMed:17293435}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g62410.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g62410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ940212 | 0.0 | FJ940212.1 Oryza sativa Japonica Group clone KCS635B12 Myb-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616493.1 | 0.0 | transcription factor MYB3R-2 | ||||
Refseq | XP_015616500.1 | 0.0 | transcription factor MYB3R-2 | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | I1NT75 | 0.0 | I1NT75_ORYGL; Uncharacterized protein | ||||
STRING | OS01T0841500-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 7e-82 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g62410.2 |
Publications ? help Back to Top | |||
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