PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g62130.1 | ||||||||
Common Name | LOC4327377, Os01g0838600, OSNPB_010838600, P0031D11.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 218aa MW: 22737.9 Da PI: 9.6729 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H LOC_Os01g62130.1 59 FECKTCNRQFPTFQALGGHRASH 81 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 122 | 144 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F+ L H+r+H LOC_Os01g62130.1 122 HECPVCGLEFPIGQALGGHMRRH 144 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.44E-8 | 57 | 81 | No hit | No description |
Pfam | PF13912 | 1.1E-12 | 58 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.118 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.44E-8 | 117 | 144 | No hit | No description |
Pfam | PF13912 | 4.2E-11 | 121 | 146 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.806 | 122 | 149 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 122 | 144 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 124 | 144 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MSKRSRSMWD MQEFVGSVDT ARVLMLLAQQ SQHGLLGGGG FAAGAQPVVV RGGAHDRVFE 60 CKTCNRQFPT FQALGGHRAS HKRPRQQQQH ALGGGAGADD AGLCLGRQPT PPRPQPAKPR 120 VHECPVCGLE FPIGQALGGH MRRHRAEAEA AATTTTTTTK NGDVGKAAAV KACDGGGVCL 180 DLNLTPSENR AKCRNVVGLG AGGQGVHKAL AMLDCFL* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.28023 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | Q5NA12 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g62130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g62130 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003231 | 0.0 | AP003231.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031D11. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633806.1 | 1e-157 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A0D9YH17 | 1e-156 | A0A0D9YH17_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0N4R1 | 1e-156 | A0A0E0N4R1_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q5NA12 | 1e-156 | Q5NA12_ORYSJ; Os01g0838600 protein | ||||
STRING | OGLUM01G40470.1 | 1e-156 | (Oryza glumipatula) | ||||
STRING | ORUFI01G40000.1 | 1e-156 | (Oryza rufipogon) | ||||
STRING | OS01T0838600-00 | 1e-156 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6282 | 21 | 38 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28710.1 | 2e-24 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g62130.1 |
Entrez Gene | 4327377 |