PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g61080.1
Common NameLOC4327518, Os01g0826400, OsJ_03928, OSNPB_010826400, WRKY24
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 556aa    MW: 59305.7 Da    PI: 7.109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g61080.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.11.8e-33220276259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh 
  LOC_Os01g61080.1 220 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITEIVYKGTHNHA 276
                       8****************************************.***************7 PP
2WRKY105.92.1e-33384442159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  LOC_Os01g61080.1 384 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASHDLRAVITTYEGKHNHD 442
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-28212278IPR003657WRKY domain
PROSITE profilePS5081123.479214278IPR003657WRKY domain
SuperFamilySSF1182902.22E-25215278IPR003657WRKY domain
SMARTSM007742.5E-36219277IPR003657WRKY domain
PfamPF031062.0E-25220275IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-37369444IPR003657WRKY domain
SuperFamilySSF1182901.83E-29376444IPR003657WRKY domain
PROSITE profilePS5081138.687379444IPR003657WRKY domain
SMARTSM007741.2E-38384443IPR003657WRKY domain
PfamPF031069.3E-26385442IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MTTSSSGSVE TSANSRLGTF SFASASFTDL LGGNAGAGGG GVSRYKAMTP PSLPLSPPPV  60
SPSSFFNSPI GMNQADFLGS PVLLTSSIFP SPTTGAFASQ HFDWRPEVAA AQSADQGGKD  120
EQRNSYSDFS FQTAPASEEA VRTTTFQPPV PPAPLGDEAY RSQQQQQPWG YQQQPAGMDA  180
GANAASFGAA PFQATSSEMA PQVQGGGGYS QPQSQRRSSD DGYNWRKYGQ KQVKGSENPR  240
SYYKCTFPNC PTKKKVERSL DGQITEIVYK GTHNHAKPQN TRRNSGSSAA QVLQSGGDMS  300
EHSFGGMSGT AATPENSSAS FGDDEIRVGS PRAGNGGGDE FDDDEPDSKR WRKDGDGEGI  360
SMAGNRTVRE PRVVVQTMSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TTAGCPVRKH  420
VERASHDLRA VITTYEGKHN HDVPAARGSA ALYRPAPPAA AATSSHPYLP NQPPPMSYQP  480
TGPQPYALRP DGFGGQGPFG GVVGGSSFGG FSGFDDARGS YMSQHQQQQR QNDAMHASRA  540
KEEPGDDMFF QNSLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-36211445878Probable WRKY transcription factor 4
2lex_A5e-36211445878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.315210.0leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329924080.0
Expression AtlasQ6IEQ7-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Function -- GeneRIF ? help Back to Top
  1. isolated and characterized ABF1 (ABA responsive element binding factor 1) gene that encodes a bZIP transcription factor
    [PMID: 20039193]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g61080.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g61080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071990.0AK107199.1 Oryza sativa Japonica Group cDNA clone:002-125-B01, full insert sequence.
GenBankAY8706080.0AY870608.1 Oryza sativa (japonica cultivar-group) WRKY24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619871.10.0WRKY transcription factor WRKY24
SwissprotQ6IEQ70.0WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A0E0FV710.0A0A0E0FV71_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N4D90.0A0A0E0N4D9_ORYRU; Uncharacterized protein
STRINGOS01T0826400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.16e-96WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]
  3. Xie Z, et al.
    Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells.
    Plant Physiol., 2005. 137(1): p. 176-89
    [PMID:15618416]
  4. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  5. Amir Hossain M, et al.
    The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice.
    Plant Mol. Biol., 2010. 72(4-5): p. 557-66
    [PMID:20039193]
  6. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  7. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]